Construct: ORF ccsbBroad304_01305
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014188.1_s304c1, BRDN0000404308
- Derived from:
- ccsbBroadEn_01305
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PSG1 (5669)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_01305
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001184825.2 | 100% | 100% | |
2 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001184826.2 | 99.2% | 98.8% | 1244_1245insCTGGAC;1246_1247insTT;1250_1251delTA |
3 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_006905.3 | 97.6% | 97.4% | (many diffs) |
4 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001297773.2 | 97.4% | 96.7% | (many diffs) |
5 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | NM_001130167.2 | 95.8% | 92.8% | (many diffs) |
6 | human | 5676 | PSG7 | pregnancy specific beta-1-g... | NM_002783.3 | 94.3% | 89.9% | (many diffs) |
7 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | NM_182707.3 | 94.1% | 90.6% | (many diffs) |
8 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_002780.5 | 93.8% | 88.5% | (many diffs) |
9 | human | 5671 | PSG3 | pregnancy specific beta-1-g... | NM_021016.4 | 93.1% | 88.1% | (many diffs) |
10 | human | 5675 | PSG6 | pregnancy specific beta-1-g... | NM_001031850.4 | 92% | 85.5% | (many diffs) |
11 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | XM_017026997.2 | 91.8% | 86.6% | (many diffs) |
12 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_002784.5 | 91% | 82% | (many diffs) |
13 | human | 5675 | PSG6 | pregnancy specific beta-1-g... | NM_002782.5 | 89.5% | 83.9% | (many diffs) |
14 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027007.2 | 88.7% | 80.7% | (many diffs) |
15 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027004.2 | 78% | 71.1% | (many diffs) |
16 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001330524.2 | 77.8% | 77.8% | 428_429ins279 |
17 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | XM_005259065.4 | 75.8% | 75.5% | (many diffs) |
18 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | XM_011527125.2 | 75.8% | 75.3% | (many diffs) |
19 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | XM_011526986.1 | 73.9% | 71.1% | (many diffs) |
20 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_001276495.1 | 72.7% | 68.9% | (many diffs) |
21 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_213633.3 | 72.4% | 67% | (many diffs) |
22 | human | 5673 | PSG5 | pregnancy specific beta-1-g... | NM_001130014.2 | 71.4% | 65.6% | (many diffs) |
23 | human | 5673 | PSG5 | pregnancy specific beta-1-g... | NM_002781.4 | 71.4% | 65.6% | (many diffs) |
24 | human | 5673 | PSG5 | pregnancy specific beta-1-g... | XM_017027003.1 | 71.4% | 65.6% | (many diffs) |
25 | human | 5670 | PSG2 | pregnancy specific beta-1-g... | NM_031246.4 | 71.4% | 65.8% | (many diffs) |
26 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | XM_017027001.2 | 71.1% | 67.3% | (many diffs) |
27 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | XM_017027002.2 | 70.8% | 65.4% | (many diffs) |
28 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_001301707.2 | 70.7% | 62.9% | (many diffs) |
29 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_001301708.2 | 70.1% | 61.5% | (many diffs) |
30 | human | 5680 | PSG11 | pregnancy specific beta-1-g... | NM_002785.3 | 69.1% | 63.5% | (many diffs) |
31 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | NM_001130168.2 | 68.3% | 66.3% | (many diffs) |
32 | human | 5671 | PSG3 | pregnancy specific beta-1-g... | XM_011527126.2 | 68.2% | 63.7% | (many diffs) |
33 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | XM_011526987.3 | 67.2% | 62.6% | (many diffs) |
34 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_001316339.2 | 66.9% | 62.7% | (many diffs) |
35 | human | 5676 | PSG7 | pregnancy specific beta-1-g... | NM_001206650.2 | 66.3% | 64.2% | (many diffs) |
36 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027005.2 | 60.6% | 54.5% | (many diffs) |
37 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_005259075.4 | 60.1% | 53.3% | (many diffs) |
38 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | XM_011526988.2 | 59.7% | 58.2% | (many diffs) |
39 | human | 5671 | PSG3 | pregnancy specific beta-1-g... | XM_011527127.2 | 52.6% | 49.8% | (many diffs) |
40 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_001301709.2 | 49.8% | 42.8% | (many diffs) |
41 | human | 653492 | PSG10P | pregnancy specific beta-1-g... | NR_026824.1 | 45.3% | (many diffs) | |
42 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027006.2 | 42.6% | 37.1% | (many diffs) |
43 | human | 5680 | PSG11 | pregnancy specific beta-1-g... | NM_001113410.2 | 42.3% | 37.5% | (many diffs) |
44 | human | 5680 | PSG11 | pregnancy specific beta-1-g... | NM_203287.2 | 42.3% | 37.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1323
- ORF length:
- 1257
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggg aaccctctca gcccctccct gcacacagcg catcaaatgg aaggggctcc 121 tgctcacagc atcactttta aacttctgga acctgcccac cactgcccaa gtcacgattg 181 aagccgagcc aaccaaagtt tccgagggga aggatgttct tctacttgtc cacaatttgc 241 cccagaatct taccggctac atctggtaca aagggcaaat gagggacctc taccattaca 301 ttacatcata tgtagtagac ggtgaaataa ttatatatgg gcctgcatat agtggacgag 361 aaacagcata ttccaatgca tccctgctga tccagaatgt cacccgggag gacgcaggat 421 cctacacctt acacatcata aagggagatg atgggactag aggagtaact ggacgtttca 481 ccttcacctt acacctggag actcctaagc cctccatctc cagcagcaac ttaaatccca 541 gggagaccat ggaggctgtg agcttaacct gtgaccctga gactccagac gcaagctacc 601 tgtggtggat gaatggtcag agcctcccta tgactcacag cttgaagctg tccgaaacca 661 acaggaccct ctttctattg ggtgtcacaa agtatactgc aggaccctat gaatgtgaaa 721 tacggaaccc agtgagtgcc agccgcagtg acccagtcac cctgaatctc ctcccgaagc 781 tgcccaagcc ctacatcacc atcaacaact taaaccccag ggagaataag gatgtcttaa 841 acttcacctg tgaacctaag agtgagaact acacctacat ttggtggcta aatggtcaga 901 gcctcccggt cagtcccagg gtaaagcgac ccattgaaaa caggatcctc attctaccca 961 gtgtcacgag aaatgaaaca ggaccctatc aatgtgaaat acgggaccga tatggtggca 1021 tccgcagtga cccagtcacc ctgaatgtcc tctatggtcc agacctcccc agaatttacc 1081 cttcattcac ctattaccgt tcaggagaag tcctctactt gtcctgttct gcggactcta 1141 acccaccggc acagtattct tggacaatta atgaaaagtt tcagctacca ggacaaaagc 1201 tctttatccg ccatattact acaaagcata gcgggctcta tgtttgctct gttcgtaact 1261 cagccactgg caaggaaagc tccaaatcca tgacagtcga agtctctgac tggacagttc 1321 cctgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc 1381 tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc 1441 tctggatta