Construct: ORF ccsbBroadEn_01305

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014188.1_s300c1, BRDN0000390372
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSG1 (5669)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184825.2 100% 100%
2 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184826.2 99.2% 98.8% 1244_1245insCTGGAC;1246_1247insTT;1250_1251delTA
3 human 5669 PSG1 pregnancy specific beta-1-g... NM_006905.3 97.6% 97.4% (many diffs)
4 human 5669 PSG1 pregnancy specific beta-1-g... NM_001297773.2 97.4% 96.7% (many diffs)
5 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130167.2 95.8% 92.8% (many diffs)
6 human 5676 PSG7 pregnancy specific beta-1-g... NM_002783.3 94.3% 89.9% (many diffs)
7 human 440533 PSG8 pregnancy specific beta-1-g... NM_182707.3 94.1% 90.6% (many diffs)
8 human 5672 PSG4 pregnancy specific beta-1-g... NM_002780.5 93.8% 88.5% (many diffs)
9 human 5671 PSG3 pregnancy specific beta-1-g... NM_021016.4 93.1% 88.1% (many diffs)
10 human 5675 PSG6 pregnancy specific beta-1-g... NM_001031850.4 92% 85.5% (many diffs)
11 human 5672 PSG4 pregnancy specific beta-1-g... XM_017026997.2 91.8% 86.6% (many diffs)
12 human 5678 PSG9 pregnancy specific beta-1-g... NM_002784.5 91% 82% (many diffs)
13 human 5675 PSG6 pregnancy specific beta-1-g... NM_002782.5 89.5% 83.9% (many diffs)
14 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027007.2 88.7% 80.7% (many diffs)
15 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027004.2 78% 71.1% (many diffs)
16 human 5669 PSG1 pregnancy specific beta-1-g... NM_001330524.2 77.8% 77.8% 428_429ins279
17 human 5669 PSG1 pregnancy specific beta-1-g... XM_005259065.4 75.8% 75.5% (many diffs)
18 human 5669 PSG1 pregnancy specific beta-1-g... XM_011527125.2 75.8% 75.3% (many diffs)
19 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526986.1 73.9% 71.1% (many diffs)
20 human 5672 PSG4 pregnancy specific beta-1-g... NM_001276495.1 72.7% 68.9% (many diffs)
21 human 5672 PSG4 pregnancy specific beta-1-g... NM_213633.3 72.4% 67% (many diffs)
22 human 5673 PSG5 pregnancy specific beta-1-g... NM_001130014.2 71.4% 65.6% (many diffs)
23 human 5673 PSG5 pregnancy specific beta-1-g... NM_002781.4 71.4% 65.6% (many diffs)
24 human 5673 PSG5 pregnancy specific beta-1-g... XM_017027003.1 71.4% 65.6% (many diffs)
25 human 5670 PSG2 pregnancy specific beta-1-g... NM_031246.4 71.4% 65.8% (many diffs)
26 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027001.2 71.1% 67.3% (many diffs)
27 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027002.2 70.8% 65.4% (many diffs)
28 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301707.2 70.7% 62.9% (many diffs)
29 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301708.2 70.1% 61.5% (many diffs)
30 human 5680 PSG11 pregnancy specific beta-1-g... NM_002785.3 69.1% 63.5% (many diffs)
31 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130168.2 68.3% 66.3% (many diffs)
32 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527126.2 68.2% 63.7% (many diffs)
33 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526987.3 67.2% 62.6% (many diffs)
34 human 5672 PSG4 pregnancy specific beta-1-g... NM_001316339.2 66.9% 62.7% (many diffs)
35 human 5676 PSG7 pregnancy specific beta-1-g... NM_001206650.2 66.3% 64.2% (many diffs)
36 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027005.2 60.6% 54.5% (many diffs)
37 human 5678 PSG9 pregnancy specific beta-1-g... XM_005259075.4 60.1% 53.3% (many diffs)
38 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526988.2 59.7% 58.2% (many diffs)
39 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527127.2 52.6% 49.8% (many diffs)
40 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301709.2 49.8% 42.8% (many diffs)
41 human 653492 PSG10P pregnancy specific beta-1-g... NR_026824.1 45.3% (many diffs)
42 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027006.2 42.6% 37.1% (many diffs)
43 human 5680 PSG11 pregnancy specific beta-1-g... NM_001113410.2 42.3% 37.5% (many diffs)
44 human 5680 PSG11 pregnancy specific beta-1-g... NM_203287.2 42.3% 37.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1323
ORF length:
1257
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TANAAAAAAG
61TTGGCATGGG AACCCTCTCA GCCCCTCCCT GCACACAGCG CATCAAATGG AAGGGGCTCC
121TGCTCACAGC ATCACTTTTA AACTTCTGGA ACCTGCCCAC CACTGCCCAA GTCACGATTG
181AAGCCGAGCC AACCAAAGTT TCCGAGGGGA AGGATGTTCT TCTACTTGTC CACAATTTGC
241CCCAGAATCT TACCGGCTAC ATCTGGTACA AAGGGCAAAT GAGGGACCTC TACCATTACA
301TTACATCATA TGTAGTAGAC GGTGAAATAA TTATATATGG GCCTGCATAT AGTGGACGAG
361AAACAGCATA TTCCAATGCA TCCCTGCTGA TCCAGAATGT CACCCGGGAG GACGCAGGAT
421CCTACACCTT ACACATCATA AAGGGAGATG ATGGGACTAG AGGAGTAACT GGACGTTTCA
481CCTTCACCTT ACACCTGGAG ACTCCTAAGC CCTCCATCTC CAGCAGCAAC TTAAATCCCA
541GGGAGACCAT GGAGGCTGTG AGCTTAACCT GTGACCCTGA GACTCCAGAC GCAAGCTACC
601TGTGGTGGAT GAATGGTCAG AGCCTCCCTA TGACTCACAG CTTGAAGCTG TCCGAAACCA
661ACAGGACCCT CTTTCTATTG GGTGTCACAA AGTATACTGC AGGACCCTAT GAATGTGAAA
721TACGGAACCC AGTGAGTGCC AGCCGCAGTG ACCCAGTCAC CCTGAATCTC CTCCCGAAGC
781TGCCCAAGCC CTACATCACC ATCAACAACT TAAACCCCAG GGAGAATAAG GATGTCTTAA
841ACTTCACCTG TGAACCTAAG AGTGAGAACT ACACCTACAT TTGGTGGCTA AATGGTCAGA
901GCCTCCCGGT CAGTCCCAGG GTAAAGCGAC CCATTGAAAA CAGGATCCTC ATTCTACCCA
961GTGTCACGAG AAATGAAACA GGACCCTATC AATGTGAAAT ACGGGACCGA TATGGTGGCA
1021TCCGCAGTGA CCCAGTCACC CTGAATGTCC TCTATGGTCC AGACCTCCCC AGAATTTACC
1081CTTCATTCAC CTATTACCGT TCAGGAGAAG TCCTCTACTT GTCCTGTTCT GCGGACTCTA
1141ACCCACCGGC ACAGTATTCT TGGACAATTA ATGAAAAGTT TCAGCTACCA GGACAAAAGC
1201TCTTTATCCG CCATATTACT ACAAAGCATA GCGGGCTCTA TGTTTGCTCT GTTCGTAACT
1261CAGCCACTGG CAAGGAAAGC TCCAAATCCA TGACAGTCGA AGTCTCTGAC TGGACAGTTC
1321CCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1381gcaacgaac

Download FASTA (ORF) (Full)