Construct: ORF ccsbBroad304_03844

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014548.1_s304c1, BRDN0000406820
Derived from:
ccsbBroadEn_03844
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DENND1A (57706)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03844
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57706 DENND1A DENN domain containing 1A NM_024820.3 100% 100%
2 human 57706 DENND1A DENN domain containing 1A XM_005252113.5 97.1% 96.5% (many diffs)
3 human 57706 DENND1A DENN domain containing 1A NM_001352966.2 94.6% 91.9% 0_1ins46;39_40ins44
4 human 57706 DENND1A DENN domain containing 1A NM_001352967.2 94.2% 87.1% 0_1ins46;83_84ins50
5 human 57706 DENND1A DENN domain containing 1A XM_011518887.3 94.2% 93.5% (many diffs)
6 human 57706 DENND1A DENN domain containing 1A XM_024447624.1 86.9% 85.5% (many diffs)
7 human 57706 DENND1A DENN domain containing 1A NM_001352968.2 83% 76.2% (many diffs)
8 human 57706 DENND1A DENN domain containing 1A XR_929830.3 57.7% (many diffs)
9 human 57706 DENND1A DENN domain containing 1A XR_929829.2 57.7% (many diffs)
10 human 57706 DENND1A DENN domain containing 1A NM_020946.1 53.8% 52.4% (many diffs)
11 human 57706 DENND1A DENN domain containing 1A XM_005252111.4 52.9% 51.2% (many diffs)
12 human 57706 DENND1A DENN domain containing 1A XM_011518886.3 52% 50.3% (many diffs)
13 human 57706 DENND1A DENN domain containing 1A XM_017014948.2 51.7% 50.1% (many diffs)
14 human 57706 DENND1A DENN domain containing 1A XM_006717195.4 50.8% 48.9% (many diffs)
15 human 57706 DENND1A DENN domain containing 1A NM_001352964.1 50.8% 49.3% (many diffs)
16 human 57706 DENND1A DENN domain containing 1A XM_011518882.3 50% 48.1% (many diffs)
17 human 57706 DENND1A DENN domain containing 1A XM_017014951.2 48.6% 44% (many diffs)
18 human 57706 DENND1A DENN domain containing 1A XM_011518885.3 48.5% 46.9% (many diffs)
19 human 57706 DENND1A DENN domain containing 1A XM_011518883.3 48.2% 46.4% (many diffs)
20 human 57706 DENND1A DENN domain containing 1A NM_001352965.1 48.1% 46.2% (many diffs)
21 human 57706 DENND1A DENN domain containing 1A XM_024447622.1 48% 45.2% (many diffs)
22 human 57706 DENND1A DENN domain containing 1A XM_024447621.1 47.8% 43.3% (many diffs)
23 human 57706 DENND1A DENN domain containing 1A XM_017014950.2 46.9% 45% (many diffs)
24 human 57706 DENND1A DENN domain containing 1A NR_148208.2 46.3% (many diffs)
25 human 57706 DENND1A DENN domain containing 1A XM_017014949.2 46.1% 44.3% (many diffs)
26 human 57706 DENND1A DENN domain containing 1A XM_024447623.1 32.4% 30.6% (many diffs)
27 human 57706 DENND1A DENN domain containing 1A XM_017014952.2 26.7% 25.3% (many diffs)
28 mouse 227801 Dennd1a DENN/MADD domain containing 1A NM_146122.3 48.5% 49.6% (many diffs)
29 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006498004.1 48.1% 48.9% (many diffs)
30 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006498003.2 47.6% 48.7% (many diffs)
31 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006497999.2 47.3% 47.8% (many diffs)
32 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006497998.3 46.5% 47% (many diffs)
33 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006498005.3 45.5% 43.3% (many diffs)
34 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006498000.3 44.3% 44.7% (many diffs)
35 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006498001.3 43.9% 42.5% (many diffs)
36 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006498002.3 43.7% 41.1% (many diffs)
37 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006498007.3 41.7% 39.9% (many diffs)
38 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_011239087.1 40.1% 37.8% (many diffs)
39 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_017317481.1 31% 31% (many diffs)
40 mouse 227801 Dennd1a DENN/MADD domain containing 1A XM_006498008.3 24.1% 23.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1743
ORF length:
1677
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg ctccaggatc aagcagaatc cagagaccac atttgaagta tatgttgaag
121tggcctatcc caggacaggt ggcactcttt cagatcctga ggtgcagagg caattcccgg
181aggactacag tgaccaggaa gttctacaga ctttgaccaa gttttgtttc cccttctatg
241tggacagcct cacagttagc caagttggcc agaacttcac attcgtgctc actgacattg
301acagcaaaca gagattcggg ttctgccgct tatcttcagg agcgaagagc tgcttctgta
361tcttaagcta tctcccctgg ttcgaggtat tttataagct gcttaacatc ctggcagatt
421acacgacaaa aagacaggaa aatcagtgga atgagcttct tgaaactctg cacaaacttc
481ccatccctga cccaggagtg tctgtccatc tcagcgtgca ttcttatttt actgtgcctg
541ataccagaga acttcccagc atacctgaga atagaaatct gacagaatat tttgtggctg
601tggatgttaa caacatgttg catctgtacg ccagtatgct gtacgaacgc cggatactca
661tcatttgcag caaactcagc actctgactg cctgcatcca cgggtctgcg gcgatgctct
721accccatgta ctggcagcac gtgtacatcc ccgtgctgcc gccgcatctg ctggactact
781gctgtgctcc catgccctac ctcataggaa tccatttaag tttaatggag aaagtcagaa
841acatggccct ggatgatgtc gtgatcctga atgtggacac caacaccctg gaaaccccct
901tcgatgacct ccagagcctc ccaaacgacg tgatctcttc cctgaagaac aggctgaaaa
961aggtctccac aaccactggg gatggtgtgg ccagagcgtt cctcaaggcc caggctgctt
1021tcttcggtag ctaccgaaac gctctgaaaa tcgagccgga ggagccgatc actttctgtg
1081aggaagcctt cgtgtcccac taccgctccg gagccatgag gcagttcctg cagaacgcca
1141cacagctgca gctcttcaag cagtttattg atggtcgatt agatcttctc aattccggcg
1201aaggtttcag tgatgttttt gaagaggaaa tcaacatggg cgagtacgct ggcagtgaca
1261aactgtacca tcagtggctc tccactgtcc ggaaaggaag tggagcaatt ctgaatactg
1321taaagaccaa agcaaatccg gccatgaaga ctgtctacaa gttcgcaaaa gatcatgcaa
1381aaatgggaat aaaagaggtg aaaaaccgct tgaagcaaaa ggacattgcc gagaatggct
1441gcgcccccac cccagaagag cagctgccaa agactgcacc gtccccactg gtggaggcca
1501aggaccccaa gctccgagaa gaccggcggc caatcacagt ccactttgga caggtgcgcc
1561cacctcgtcc acatgttgtt aagagaccaa agagcaacat cgcagtggaa ggccggagga
1621cgtctgtgcc gagccctgag caaaacacca ttgcaacacc agctacactc cacatcctac
1681agaaaagcat tacccatttt gcggccaagt tcccgacgag aggctggacc tcttcatcac
1741attgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1801tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
1861tctggatta

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