Construct: ORF ccsbBroad304_03844
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014548.1_s304c1, BRDN0000406820
- Derived from:
- ccsbBroadEn_03844
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DENND1A (57706)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_03844
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57706 | DENND1A | DENN domain containing 1A | NM_024820.3 | 100% | 100% | |
| 2 | human | 57706 | DENND1A | DENN domain containing 1A | XM_005252113.5 | 97.1% | 96.5% | (many diffs) |
| 3 | human | 57706 | DENND1A | DENN domain containing 1A | NM_001352966.2 | 94.6% | 91.9% | 0_1ins46;39_40ins44 |
| 4 | human | 57706 | DENND1A | DENN domain containing 1A | NM_001352967.2 | 94.2% | 87.1% | 0_1ins46;83_84ins50 |
| 5 | human | 57706 | DENND1A | DENN domain containing 1A | XM_011518887.3 | 94.2% | 93.5% | (many diffs) |
| 6 | human | 57706 | DENND1A | DENN domain containing 1A | XM_024447624.1 | 86.9% | 85.5% | (many diffs) |
| 7 | human | 57706 | DENND1A | DENN domain containing 1A | NM_001352968.2 | 83% | 76.2% | (many diffs) |
| 8 | human | 57706 | DENND1A | DENN domain containing 1A | XR_929830.3 | 57.7% | (many diffs) | |
| 9 | human | 57706 | DENND1A | DENN domain containing 1A | XR_929829.2 | 57.7% | (many diffs) | |
| 10 | human | 57706 | DENND1A | DENN domain containing 1A | NM_020946.1 | 53.8% | 52.4% | (many diffs) |
| 11 | human | 57706 | DENND1A | DENN domain containing 1A | XM_005252111.4 | 52.9% | 51.2% | (many diffs) |
| 12 | human | 57706 | DENND1A | DENN domain containing 1A | XM_011518886.3 | 52% | 50.3% | (many diffs) |
| 13 | human | 57706 | DENND1A | DENN domain containing 1A | XM_017014948.2 | 51.7% | 50.1% | (many diffs) |
| 14 | human | 57706 | DENND1A | DENN domain containing 1A | XM_006717195.4 | 50.8% | 48.9% | (many diffs) |
| 15 | human | 57706 | DENND1A | DENN domain containing 1A | NM_001352964.1 | 50.8% | 49.3% | (many diffs) |
| 16 | human | 57706 | DENND1A | DENN domain containing 1A | XM_011518882.3 | 50% | 48.1% | (many diffs) |
| 17 | human | 57706 | DENND1A | DENN domain containing 1A | XM_017014951.2 | 48.6% | 44% | (many diffs) |
| 18 | human | 57706 | DENND1A | DENN domain containing 1A | XM_011518885.3 | 48.5% | 46.9% | (many diffs) |
| 19 | human | 57706 | DENND1A | DENN domain containing 1A | XM_011518883.3 | 48.2% | 46.4% | (many diffs) |
| 20 | human | 57706 | DENND1A | DENN domain containing 1A | NM_001352965.1 | 48.1% | 46.2% | (many diffs) |
| 21 | human | 57706 | DENND1A | DENN domain containing 1A | XM_024447622.1 | 48% | 45.2% | (many diffs) |
| 22 | human | 57706 | DENND1A | DENN domain containing 1A | XM_024447621.1 | 47.8% | 43.3% | (many diffs) |
| 23 | human | 57706 | DENND1A | DENN domain containing 1A | XM_017014950.2 | 46.9% | 45% | (many diffs) |
| 24 | human | 57706 | DENND1A | DENN domain containing 1A | NR_148208.2 | 46.3% | (many diffs) | |
| 25 | human | 57706 | DENND1A | DENN domain containing 1A | XM_017014949.2 | 46.1% | 44.3% | (many diffs) |
| 26 | human | 57706 | DENND1A | DENN domain containing 1A | XM_024447623.1 | 32.4% | 30.6% | (many diffs) |
| 27 | human | 57706 | DENND1A | DENN domain containing 1A | XM_017014952.2 | 26.7% | 25.3% | (many diffs) |
| 28 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | NM_146122.3 | 48.5% | 49.6% | (many diffs) |
| 29 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006498004.1 | 48.1% | 48.9% | (many diffs) |
| 30 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006498003.2 | 47.6% | 48.7% | (many diffs) |
| 31 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006497999.2 | 47.3% | 47.8% | (many diffs) |
| 32 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006497998.3 | 46.5% | 47% | (many diffs) |
| 33 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006498005.3 | 45.5% | 43.3% | (many diffs) |
| 34 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006498000.3 | 44.3% | 44.7% | (many diffs) |
| 35 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006498001.3 | 43.9% | 42.5% | (many diffs) |
| 36 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006498002.3 | 43.7% | 41.1% | (many diffs) |
| 37 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006498007.3 | 41.7% | 39.9% | (many diffs) |
| 38 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_011239087.1 | 40.1% | 37.8% | (many diffs) |
| 39 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_017317481.1 | 31% | 31% | (many diffs) |
| 40 | mouse | 227801 | Dennd1a | DENN/MADD domain containing 1A | XM_006498008.3 | 24.1% | 23.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1743
- ORF length:
- 1677
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggg ctccaggatc aagcagaatc cagagaccac atttgaagta tatgttgaag 121 tggcctatcc caggacaggt ggcactcttt cagatcctga ggtgcagagg caattcccgg 181 aggactacag tgaccaggaa gttctacaga ctttgaccaa gttttgtttc cccttctatg 241 tggacagcct cacagttagc caagttggcc agaacttcac attcgtgctc actgacattg 301 acagcaaaca gagattcggg ttctgccgct tatcttcagg agcgaagagc tgcttctgta 361 tcttaagcta tctcccctgg ttcgaggtat tttataagct gcttaacatc ctggcagatt 421 acacgacaaa aagacaggaa aatcagtgga atgagcttct tgaaactctg cacaaacttc 481 ccatccctga cccaggagtg tctgtccatc tcagcgtgca ttcttatttt actgtgcctg 541 ataccagaga acttcccagc atacctgaga atagaaatct gacagaatat tttgtggctg 601 tggatgttaa caacatgttg catctgtacg ccagtatgct gtacgaacgc cggatactca 661 tcatttgcag caaactcagc actctgactg cctgcatcca cgggtctgcg gcgatgctct 721 accccatgta ctggcagcac gtgtacatcc ccgtgctgcc gccgcatctg ctggactact 781 gctgtgctcc catgccctac ctcataggaa tccatttaag tttaatggag aaagtcagaa 841 acatggccct ggatgatgtc gtgatcctga atgtggacac caacaccctg gaaaccccct 901 tcgatgacct ccagagcctc ccaaacgacg tgatctcttc cctgaagaac aggctgaaaa 961 aggtctccac aaccactggg gatggtgtgg ccagagcgtt cctcaaggcc caggctgctt 1021 tcttcggtag ctaccgaaac gctctgaaaa tcgagccgga ggagccgatc actttctgtg 1081 aggaagcctt cgtgtcccac taccgctccg gagccatgag gcagttcctg cagaacgcca 1141 cacagctgca gctcttcaag cagtttattg atggtcgatt agatcttctc aattccggcg 1201 aaggtttcag tgatgttttt gaagaggaaa tcaacatggg cgagtacgct ggcagtgaca 1261 aactgtacca tcagtggctc tccactgtcc ggaaaggaag tggagcaatt ctgaatactg 1321 taaagaccaa agcaaatccg gccatgaaga ctgtctacaa gttcgcaaaa gatcatgcaa 1381 aaatgggaat aaaagaggtg aaaaaccgct tgaagcaaaa ggacattgcc gagaatggct 1441 gcgcccccac cccagaagag cagctgccaa agactgcacc gtccccactg gtggaggcca 1501 aggaccccaa gctccgagaa gaccggcggc caatcacagt ccactttgga caggtgcgcc 1561 cacctcgtcc acatgttgtt aagagaccaa agagcaacat cgcagtggaa ggccggagga 1621 cgtctgtgcc gagccctgag caaaacacca ttgcaacacc agctacactc cacatcctac 1681 agaaaagcat tacccatttt gcggccaagt tcccgacgag aggctggacc tcttcatcac 1741 attgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc 1801 tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc 1861 tctggatta