Construct: ORF ccsbBroad304_10057
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008593.1_s304c1, BRDN0000411364
- Derived from:
- ccsbBroadEn_10057
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC18A (348174)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10057
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 348174 | CLEC18A | C-type lectin domain family... | NM_001136214.3 | 99.8% | 99.5% | 817T>C;1261G>A |
| 2 | human | 348174 | CLEC18A | C-type lectin domain family... | NM_001271197.2 | 99.8% | 99.5% | 817T>C;1261G>A |
| 3 | human | 348174 | CLEC18A | C-type lectin domain family... | NM_001370523.2 | 99.8% | 99.5% | 817T>C;1261G>A |
| 4 | human | 348174 | CLEC18A | C-type lectin domain family... | NM_182619.4 | 99.8% | 99.5% | 817T>C;1261G>A |
| 5 | human | 283971 | CLEC18C | C-type lectin domain family... | NM_173619.4 | 99.5% | 99.3% | (many diffs) |
| 6 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_024450239.1 | 99.5% | 99.3% | (many diffs) |
| 7 | human | 497190 | CLEC18B | C-type lectin domain family... | XM_005255976.2 | 99.1% | 98.2% | (many diffs) |
| 8 | human | 497190 | CLEC18B | C-type lectin domain family... | XM_017023255.1 | 99.1% | 98.2% | (many diffs) |
| 9 | human | 497190 | CLEC18B | C-type lectin domain family... | NM_001011880.2 | 97.1% | 96.2% | (many diffs) |
| 10 | human | 348174 | CLEC18A | C-type lectin domain family... | XM_017023206.1 | 92.1% | 89.3% | (many diffs) |
| 11 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_024450240.1 | 82.5% | 75.2% | (many diffs) |
| 12 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_011523036.2 | 81.9% | 81.8% | 215_216ins240;577T>C |
| 13 | human | 497190 | CLEC18B | C-type lectin domain family... | XM_011523093.3 | 81.6% | 80.7% | (many diffs) |
| 14 | human | 348174 | CLEC18A | C-type lectin domain family... | XM_017023207.1 | 75.4% | 72.8% | (many diffs) |
| 15 | human | 348174 | CLEC18A | C-type lectin domain family... | XM_017023208.2 | 75.4% | 72.8% | (many diffs) |
| 16 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_024450241.1 | 72.1% | 65.4% | (many diffs) |
| 17 | human | 348174 | CLEC18A | C-type lectin domain family... | XR_001751900.1 | 65.8% | (many diffs) | |
| 18 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_024450242.1 | 65.3% | 56.8% | (many diffs) |
| 19 | human | 348174 | CLEC18A | C-type lectin domain family... | XR_002957800.1 | 64.5% | (many diffs) | |
| 20 | human | 497190 | CLEC18B | C-type lectin domain family... | XR_001751905.1 | 62.3% | (many diffs) | |
| 21 | human | 497190 | CLEC18B | C-type lectin domain family... | XR_002957807.1 | 61.1% | (many diffs) | |
| 22 | human | 497190 | CLEC18B | C-type lectin domain family... | XR_002957808.1 | 45.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1404
- ORF length:
- 1338
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgct gcatccagag acctcccctg gccgggggca tctcctggct gtgctcctgg 121 ccctccttgg caccgcctgg gcagaggtgt ggccacccca gctgcaggag caggctccga 181 tggccggagc cctgaacagg aaggagagtt tcttgctcct ctccctgcac aaccgcctgc 241 gcagctgggt ccagccccct gcggctgaca tgcggaggct ggactggagt gacagcctgg 301 cccagctggc tcaagccagg gcagccctct gtggaacccc aaccccgagc ctggcgtccg 361 gcctgtggcg caccctgcaa gtgggctgga acatgcagct gctacccgcg ggcttggtgt 421 cctttgtcga agtggtcagc ctatggtttg cagaggggca gcggtacagc cacgcggcag 481 gagagtgtgc tcgcaacgcc acctgcaccc actacacgca gctcgtgtgg gccacctcaa 541 gccagctggg ctgtgggcgg cacctgtgct ctgcaggcca ggcagcgata gaagcctttg 601 tctgtgccta ctcccccaga ggcaactggg aggtcaacgg gaagacaatc gtcccctata 661 agaagggtgc ctggtgttcg ctctgcacag ccagtgtctc aggctgcttc aaagcctggg 721 accatgcagg ggggctctgt gaggtcccca ggaatccttg tcgcatgagc tgccagaacc 781 atggacgtct caacatcagc acctgccact gccactgtcc ccctggctac acgggcagat 841 actgccaagt gaggtgcagc ctgcagtgtg tgcacggccg gctccgggag gaggagtgct 901 cgtgcgtctg tgacatcggc tacgggggag cccagtgtgc caccaaggtg cattttccct 961 tccacacctg tgacctgagg atcgacggag actgcttcat ggtgtcttca gaggcagaca 1021 cctattacag agccaggatg aaatgtcaga ggaaaggcgg ggtgctggcc cagatcaaga 1081 gccagaaagt gcaggacatc ctcgccttct atctgggccg cctggagacc accaacgagg 1141 tgattgacag tgacttcgag accaggaact tctggatcgg gctcacctac aagaccgcca 1201 aggactcctt ccgctgggcc acaggggagc accaggcctt caccagtttt gcctttgggc 1261 agcctgacaa ccacgggttt ggcaactgcg tggagctgca ggcttcagct gccttcaact 1321 ggaacaacca gcgctgcaaa acccgaaacc gttacatctg ccagtttgcc caggagcaca 1381 tctcccggtg gggcccaggg tcctgcccaa ctttcttgta caaagtggtt ggtaagccta 1441 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 1501 gcgttaagtc gacaatcaac ctctggatta