Construct: ORF ccsbBroad304_10684
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014337.1_s304c1, BRDN0000408030
- Derived from:
- ccsbBroadEn_10684
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AQP7 (364)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10684
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 364 | AQP7 | aquaporin 7 | NM_001318156.1 | 100% | 100% | |
| 2 | human | 364 | AQP7 | aquaporin 7 | XM_017014706.2 | 91.3% | 89.3% | (many diffs) |
| 3 | human | 112267859 | LOC112267859 | putative aquaporin-7-like p... | XM_024447730.1 | 85.6% | 81.7% | (many diffs) |
| 4 | human | 364 | AQP7 | aquaporin 7 | XM_024447539.1 | 83.7% | 83.7% | 0_1ins105 |
| 5 | human | 364 | AQP7 | aquaporin 7 | XM_024447535.1 | 79.1% | 79.1% | 1_171del |
| 6 | human | 364 | AQP7 | aquaporin 7 | XM_024447536.1 | 79.1% | 79.1% | 1_171del |
| 7 | human | 364 | AQP7 | aquaporin 7 | XM_006716765.3 | 75.7% | 68.1% | 571_629del;708_855del |
| 8 | human | 364 | AQP7 | aquaporin 7 | XM_011517867.2 | 75.7% | 68.1% | 571_629del;708_855del |
| 9 | human | 112267859 | LOC112267859 | putative aquaporin-7-like p... | XM_024447731.1 | 75.3% | 71.8% | (many diffs) |
| 10 | human | 364 | AQP7 | aquaporin 7 | NM_001318157.1 | 72.5% | 70.9% | (many diffs) |
| 11 | human | 364 | AQP7 | aquaporin 7 | NM_001318158.1 | 72.2% | 70.6% | (many diffs) |
| 12 | human | 112267859 | LOC112267859 | putative aquaporin-7-like p... | XM_024447729.1 | 66.5% | 56.4% | (many diffs) |
| 13 | human | 364 | AQP7 | aquaporin 7 | XM_017014701.1 | 63.5% | 56% | 0_1ins105;466_524del;603_750del |
| 14 | human | 364 | AQP7 | aquaporin 7 | XM_017014702.2 | 63.5% | 56% | 0_1ins105;466_524del;603_750del |
| 15 | human | 364 | AQP7 | aquaporin 7 | XM_017014704.1 | 63.5% | 56% | 0_1ins105;466_524del;603_750del |
| 16 | human | 364 | AQP7 | aquaporin 7 | XM_017014705.2 | 63.5% | 56% | 0_1ins105;466_524del;603_750del |
| 17 | human | 364 | AQP7 | aquaporin 7 | XM_024447537.1 | 63.5% | 56% | 0_1ins105;466_524del;603_750del |
| 18 | human | 364 | AQP7 | aquaporin 7 | XM_024447538.1 | 63.5% | 56% | 0_1ins105;466_524del;603_750del |
| 19 | human | 364 | AQP7 | aquaporin 7 | XM_017014700.1 | 63.3% | 57.1% | 1_168del;739_797del;876_1023del |
| 20 | human | 364 | AQP7 | aquaporin 7 | NM_001170.3 | 63.1% | 56.9% | 1_171del;742_800del;879_1026del |
| 21 | human | 364 | AQP7 | aquaporin 7 | XM_005251453.3 | 63.1% | 56.9% | 1_171del;742_800del;879_1026del |
| 22 | human | 364 | AQP7 | aquaporin 7 | XM_011517866.3 | 63.1% | 56.9% | 1_171del;742_800del;879_1026del |
| 23 | human | 100509620 | LOC100509620 | putative aquaporin-7-like p... | XM_006712887.3 | 55.2% | 48% | (many diffs) |
| 24 | human | 100509620 | LOC100509620 | putative aquaporin-7-like p... | XM_017005469.2 | 42.5% | 33.5% | (many diffs) |
| 25 | human | 100509620 | LOC100509620 | putative aquaporin-7-like p... | XM_017005468.2 | 40% | 23.7% | (many diffs) |
| 26 | human | 364 | AQP7 | aquaporin 7 | NR_134514.1 | 36.6% | (many diffs) | |
| 27 | human | 364 | AQP7 | aquaporin 7 | NR_134515.1 | 34.3% | (many diffs) | |
| 28 | human | 112267859 | LOC112267859 | putative aquaporin-7-like p... | XM_024447732.1 | 31.2% | 23.1% | (many diffs) |
| 29 | human | 364 | AQP7 | aquaporin 7 | NR_134513.1 | 29.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 714
- ORF length:
- 648
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggt tctaaataaa aaatatggga gctaccttgg tgtcaacttg ggttttggct 121 tcggagtcac catgggagtg cacgtggcag gccgcatctc tggagcccac atgaacgcag 181 ctgtgacctt tgctaactgt gcgctgggcc gcgtgccctg gaggaagttt ccggtctatg 241 tgctggggca gttcctgggc tccttcctgg cggctgccac catctacagt ctcttctaca 301 cggccattct ccacttttcg ggtggacagc tgatggtgac cggtcccgtc gctacagctg 361 gcatttttgc cacctacctt cctgatcaca tgacattgtg gcggggcttc ctgaatgagg 421 cgtggctgac cgggatgctc cagctgtgtc tcttcgccat cacggaccag gagaacaacc 481 cagcactgcc aggaacagag gcgctggtga taggcatcct cgtggtcatc atcggggtgt 541 cccttggcat gaacacagga tatgccatca acccgtcccg ggacctgccc ccccgcatct 601 tcaccttcat tgctggttgg ggcaaacagg tcttcaggtg gcatcatcta cctggtcttc 661 attggctcca ccatcccacg ggagcccctg aaattggagg attctgtggc gtatgcccaa 721 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 781 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta