Construct: ORF ccsbBroad304_13287

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006851.1_s304c1, BRDN0000409660
Derived from:
ccsbBroadEn_13287
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNTN4 (152330)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13287
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 152330 CNTN4 contactin 4 NM_001206956.1 99.8% 100% (many diffs)
2 human 152330 CNTN4 contactin 4 NM_175613.2 99.6% 99.8% (many diffs)
3 human 152330 CNTN4 contactin 4 XM_011533431.2 68.5% 68.6% (many diffs)
4 human 152330 CNTN4 contactin 4 XM_006713004.4 67.8% 68% (many diffs)
5 human 152330 CNTN4 contactin 4 XM_017005785.1 67.8% 68% (many diffs)
6 human 152330 CNTN4 contactin 4 XM_017005786.1 67.8% 68% (many diffs)
7 human 152330 CNTN4 contactin 4 XM_017005787.1 67.8% 68% (many diffs)
8 human 152330 CNTN4 contactin 4 NM_001206955.1 67.8% 67.9% (many diffs)
9 human 152330 CNTN4 contactin 4 NM_001350095.1 67.8% 67.9% (many diffs)
10 human 152330 CNTN4 contactin 4 NM_175607.3 67.8% 67.9% (many diffs)
11 human 152330 CNTN4 contactin 4 XM_011533425.3 67.8% 67.9% (many diffs)
12 human 152330 CNTN4 contactin 4 XM_011533427.2 67.8% 67.9% (many diffs)
13 human 152330 CNTN4 contactin 4 XM_011533428.2 67.8% 67.9% (many diffs)
14 human 152330 CNTN4 contactin 4 XM_011533429.2 67.8% 67.9% (many diffs)
15 human 152330 CNTN4 contactin 4 XM_011533430.2 67.8% 67.9% (many diffs)
16 human 152330 CNTN4 contactin 4 XM_017005782.1 67.8% 67.9% (many diffs)
17 human 152330 CNTN4 contactin 4 XM_017005783.1 67.8% 67.9% (many diffs)
18 human 152330 CNTN4 contactin 4 XM_017005784.2 67.8% 67.9% (many diffs)
19 mouse 269784 Cntn4 contactin 4 XM_006506196.2 61.3% 64.9% (many diffs)
20 mouse 269784 Cntn4 contactin 4 XM_017321598.1 61.3% 64.9% (many diffs)
21 mouse 269784 Cntn4 contactin 4 NM_001109749.1 61.3% 64.9% (many diffs)
22 mouse 269784 Cntn4 contactin 4 XM_006506193.2 61.3% 64.9% (many diffs)
23 mouse 269784 Cntn4 contactin 4 XM_006506194.3 61.3% 64.9% (many diffs)
24 mouse 269784 Cntn4 contactin 4 XM_006506195.3 61.3% 64.9% (many diffs)
25 mouse 269784 Cntn4 contactin 4 XM_006506198.2 52.3% 55.2% (many diffs)
26 mouse 269784 Cntn4 contactin 4 XM_006506197.2 52.3% 55.1% (many diffs)
27 mouse 269784 Cntn4 contactin 4 NM_001109751.1 32.7% 34% (many diffs)
28 mouse 269784 Cntn4 contactin 4 NM_173004.3 32.7% 34% (many diffs)
29 mouse 269784 Cntn4 contactin 4 XM_017321599.1 32.7% 34% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2157
ORF length:
2091
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga agaaaatgtc ttttgggaat gtaaagcaaa tggaaggcct aagcctacat
121acaagtggct aaaaaatggc gaacctctgc taactcggga tagaattcaa attgagcaag
181gaacactcaa cataacaata gtgaacctct cagatgctgg catgtatcag tgtttggcag
241agaataaaca tggagttatc ttttccaacg cagagcttag tgttatagct gtaggtccag
301atttttcaag aacactcttg aaaagagtaa ctcttgtcaa agtgggaggt gaagttgtca
361ttgagtgtaa gccaaaagcg tctccaaaac ctgtttacac ctggaagaaa ggaagggata
421tattaaaaga aaatgaaaga attaccattt ctgaagatgg aaacctcaga atcatcaacg
481ttactaaatc agacgctggg agttatacct gtatagccac taaccatttt ggaactgcta
541gcagtactgg aaacttggta gtgaaagatc caacaagggt aatggtaccc ccttccagta
601tggatgtcac tgttggagag agtattgttt taccgtgcca ggtaacgcat gatcactcgc
661tagacatcgt gtttacttgg tcatttaatg gacacctgat agactttgac agagatgggg
721accactttga aagagttgga ggggattcag ctggtgattt gatgatccga aacatccaac
781tgaagcatgc tgggaaatat gtctgcatgg tccaaacaag tgtggacagg ctatctgctg
841ctgcagacct gattgtaaga ggtcctccag gtcccccaga ggctgtgaca atagacgaaa
901tcacagatac cactgctcag ctctcctgga gacccgggcc tgacaatcac agccccatca
961ccatgtatgt cattcaagcc aggactccgt tctccgtggg ctggcaagca gtcagtacag
1021tcccagaact cattgatggg aagacattca cagcgaccgt ggtgggtttg aacccttggg
1081ttgaatatga attccgcaca gttgcagcca acgtgattgg gattggggag cccagccgcc
1141cctcagagaa acggagaaca gaagaagctc tccccgaagt cacaccagcg aatgtcagtg
1201gtggcggagg cagcaaatct gaactggtta taacctggga gacggtccct gaggaattac
1261agaatggtcg tggctttggt tatgtggtgg ccttccggcc ctacggtaaa atgatctgga
1321tgctgacagt gctggcctca gctgacgcct ctagatacgt gttcaggaat gagagcgtgc
1381accccttctc tccctttgag gttaaagtag gtgtcttcaa caacaaagga gaaggccctt
1441tcagtcccac cacggtggtg tattctgcag aagaagaacc caccaaacca ccagccagta
1501tctttgccag aagtctttct gccacagata ttgaagtttt ctgggcctcc ccactggaga
1561agaatagagg acgaatacaa ggttatgagg ttaaatattg gagacatgaa gacaaagaag
1621aaaatgctag aaaaatacga acagttggaa atcagacatc aacaaaaatc acgaacttaa
1681aaggcagtgt gctgtatcac ttagctgtca aggcatataa ttctgctggg acaggcccct
1741ctagtgcaac agtcaatgtg acaacccgaa agccaccacc aagtcaaccc cccggaaaca
1801tcatatggaa ttcatcagac tccaaaatta tcctgaattg ggatcaagtg aaggccctgg
1861ataatgagtc ggaagtaaaa ggatacaaag tcttgtacag atggaacaga caaagcagca
1921catctgtcat tgaaacaaat aaaacatcgg tggagctttc tttgcctttc gatgaagatt
1981atataataga aattaagcca ttcagcgacg gaggagatgg cagcagcagt gaacaaattc
2041gaattccaaa gatatcaaat gcctacgcga gaggatctgg ggcttccact tcgaatgcat
2101gtacgctgtc agccatcagt acaataatga tttccctcac agctaggtcc agtttatgcc
2161caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
2221ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
2281tta

Download FASTA (ORF) (Full)

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