Construct: ORF ccsbBroad304_16170
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004157.1_s304c1, BRDN0000405374
- Derived from:
- ccsbBroadEn_16170
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GOLGA8DP (100132979)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_16170
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001368080.1 | 99% | 98.3% | (many diffs) |
| 2 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449812.1 | 99% | 98.3% | (many diffs) |
| 3 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449813.1 | 99% | 98.3% | (many diffs) |
| 4 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001368078.1 | 98.1% | 97.4% | (many diffs) |
| 5 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449810.1 | 94.4% | 93.7% | (many diffs) |
| 6 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449811.1 | 94.4% | 93.7% | (many diffs) |
| 7 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449906.1 | 94.4% | 93.7% | (many diffs) |
| 8 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449907.1 | 94.4% | 93.7% | (many diffs) |
| 9 | human | 653061 | GOLGA8S | golgin A8 family member S | NM_001355465.1 | 89.9% | 84.9% | (many diffs) |
| 10 | human | 653061 | GOLGA8S | golgin A8 family member S | XM_024450030.1 | 89.9% | 84.9% | (many diffs) |
| 11 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521951.3 | 79.1% | 72.1% | (many diffs) |
| 12 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521954.3 | 79.1% | 72.1% | (many diffs) |
| 13 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_024450037.1 | 79.1% | 72.1% | (many diffs) |
| 14 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450034.1 | 78.4% | 70.5% | (many diffs) |
| 15 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450035.1 | 78.4% | 70.5% | (many diffs) |
| 16 | human | 728047 | GOLGA8O | golgin A8 family member O | XM_024450042.1 | 78.1% | 69.8% | (many diffs) |
| 17 | human | 23015 | GOLGA8A | golgin A8 family member A | XM_017022020.2 | 71.2% | 63.6% | (many diffs) |
| 18 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_024450036.1 | 69.1% | 63% | (many diffs) |
| 19 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450033.1 | 68.5% | 61.6% | (many diffs) |
| 20 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001350919.2 | 65.7% | 65.2% | (many diffs) |
| 21 | human | 100132565 | GOLGA8F | golgin A8 family member F | NM_001350920.1 | 65.7% | 65.2% | (many diffs) |
| 22 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449809.1 | 63.7% | 63.3% | (many diffs) |
| 23 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449905.1 | 63.7% | 63.3% | (many diffs) |
| 24 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449808.1 | 63.6% | 63.2% | (many diffs) |
| 25 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449904.1 | 63.6% | 63.2% | (many diffs) |
| 26 | human | 653061 | GOLGA8S | golgin A8 family member S | XM_024450031.1 | 63.5% | 54.5% | (many diffs) |
| 27 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_006720654.3 | 61.6% | 56.1% | (many diffs) |
| 28 | human | 653073 | GOLGA8J | golgin A8 family member J | XM_006720651.3 | 61.5% | 55.6% | (many diffs) |
| 29 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450032.1 | 61% | 54.8% | (many diffs) |
| 30 | human | 653720 | GOLGA8M | golgin A8 family member M | NM_001282468.1 | 60.3% | 55% | (many diffs) |
| 31 | human | 653073 | GOLGA8J | golgin A8 family member J | NM_001282472.1 | 60.3% | 54.5% | (many diffs) |
| 32 | human | 728498 | GOLGA8H | golgin A8 family member H | NM_001282490.1 | 60.1% | 54.2% | (many diffs) |
| 33 | human | 653075 | GOLGA8T | golgin A8 family member T | NM_001355469.1 | 59.8% | 53.7% | (many diffs) |
| 34 | human | 728047 | GOLGA8O | golgin A8 family member O | NM_001277308.1 | 59.6% | 53.3% | (many diffs) |
| 35 | human | 643699 | GOLGA8N | golgin A8 family member N | NM_001282494.1 | 59.6% | 53.3% | (many diffs) |
| 36 | human | 653125 | GOLGA8K | golgin A8 family member K | NM_001282493.1 | 59.5% | 53.7% | (many diffs) |
| 37 | human | 727909 | GOLGA8Q | golgin A8 family member Q | NM_001355476.1 | 59.5% | 52.9% | (many diffs) |
| 38 | human | 101059918 | GOLGA8R | golgin A8 family member R | NM_001282484.1 | 59.2% | 52.3% | (many diffs) |
| 39 | human | 728047 | GOLGA8O | golgin A8 family member O | XM_011521988.3 | 56.3% | 50% | (many diffs) |
| 40 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_005268284.5 | 56.3% | 51.3% | (many diffs) |
| 41 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_181077.4 | 55.3% | 49.3% | (many diffs) |
| 42 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_001368071.2 | 55.3% | 49.3% | (many diffs) |
| 43 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_001368072.1 | 55.3% | 49.3% | (many diffs) |
| 44 | human | 440270 | GOLGA8B | golgin A8 family member B | NM_001023567.5 | 55.3% | 49.2% | (many diffs) |
| 45 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_005268285.5 | 53.2% | 48.2% | (many diffs) |
| 46 | human | 100132565 | GOLGA8F | golgin A8 family member F | XR_002957623.1 | 42.4% | (many diffs) | |
| 47 | human | 283768 | GOLGA8G | golgin A8 family member G | XR_002957634.1 | 42.4% | (many diffs) | |
| 48 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521952.3 | 39.7% | 32.2% | (many diffs) |
| 49 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017030255.2 | 33.7% | 29.1% | (many diffs) |
| 50 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017030256.2 | 33.7% | 29.1% | (many diffs) |
| 51 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017030316.2 | 33.7% | 29.1% | (many diffs) |
| 52 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017030317.2 | 33.7% | 29.1% | (many diffs) |
| 53 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017022809.1 | 33.5% | 28.7% | (many diffs) |
| 54 | human | 653073 | GOLGA8J | golgin A8 family member J | XM_011521950.2 | 33.4% | 27.5% | (many diffs) |
| 55 | human | 653073 | GOLGA8J | golgin A8 family member J | XR_002957674.1 | 32.2% | (many diffs) | |
| 56 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521953.3 | 31% | 25.6% | (many diffs) |
| 57 | human | 100132565 | GOLGA8F | golgin A8 family member F | NR_033351.1 | 28.3% | (many diffs) | |
| 58 | human | 390535 | GOLGA8EP | golgin A8 family member E, ... | NR_033350.1 | 24.2% | (many diffs) | |
| 59 | human | 729786 | GOLGA8CP | golgin A8 family member C, ... | NR_027411.2 | 24.2% | (many diffs) | |
| 60 | human | 100132979 | GOLGA8DP | golgin A8 family member D, ... | NR_027407.1 | 24.1% | (many diffs) | |
| 61 | human | 440270 | GOLGA8B | golgin A8 family member B | NR_027410.1 | 15.9% | (many diffs) | |
| 62 | human | 23015 | GOLGA8A | golgin A8 family member A | NR_027409.2 | 15.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1359
- ORF length:
- 1290
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagtggaag ttagagcagt ccatgcggga gcaggcactg ctgaaagcgc 121 agctgacaca gttgaaggag tcacttaaag aagtccagct agagagggat gaatatgctg 181 aacatctaaa aggagagagg gcccggtggc agcagaggat gagaaaaatg tcacaggagg 241 tttgctcgtt gaagaaggag aagaagcatg ataaatatcg ggtagagaag ctggagagga 301 gcttgtccaa actcaaaaac cagatggctg aacctctgcc cccggagccc ccagcagtgc 361 cctctgaggt ggagctgcag cacctgagga aggaactaga gagagtggca ggagcgctcc 421 aggcccaggt ggagtacaat cagcgcataa gtctcctgaa tgaggggcaa aaggagaggc 481 ttcgggagca ggaggagagg cttcaggagc agcaggagag gcttccagag caggaggaga 541 ggcttcagca gctggccgag ccacagaaca gcttcaagga gctgaacaat gagaacaaga 601 gcgtactaca gttggagcag caagtaaagg agctgcagga gaagctaggc aaggagcgtc 661 tggaagctgc cagccagcag aaacagcagc taacggccca gttgagcctc atggctctcc 721 ctggggaagg acacggagga gaacatctgg acagtgaggg ggaggaggca cctcggccca 781 tgccgagtgt cccagaggac ctggagagca gggaggccat gagcggcttt atggaccacc 841 tggaggagaa ggcagacctg agtgagctgg tggagaaaga agaacttgga ttcttccagt 901 actacagaga gagatgccat cagaaagttt atcaccctat aacaaagcca gggggcagtg 961 ccaaagatgc agcaccggga ggaggacacc atcaggctgg ccctggacag ggaggagatg 1021 aaggtgaagc tgctggagct gcaggagatg gtgttgcagc tggtggcgac tacaagggac 1081 acagcaaatt cttggtgact gcccagaacc ctgctcatga gcccagtcca ggagccccag 1141 ccccccagga gcttggggct gcccacaagc atggtgatct ttgtgaggtg agcctcactg 1201 acagcgtgga gcctgtgcaa ggagaggcca gggagggttc tccccacgac aaccctactg 1261 cacagccgat cgtgcaggac caccaggagc acccaggctt gggcagcaac tgctgtgtgc 1321 cattcttttg ctgggcttgg ctgccaagaa gaaggagatn nccaactttc ttgtacaaag 1381 tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta 1441 gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta