Construct: ORF ccsbBroad304_16172

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014019.1_s304c1, BRDN0000405428
Derived from:
ccsbBroadEn_16172
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_16172
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 283768 GOLGA8G golgin A8 family member G NM_001368080.1 65.8% 65.8% 360_800del
2 human 100132565 GOLGA8F golgin A8 family member F XM_024449812.1 65.8% 65.8% 360_800del
3 human 100132565 GOLGA8F golgin A8 family member F XM_024449813.1 65.8% 65.8% 360_800del
4 human 283768 GOLGA8G golgin A8 family member G NM_001368078.1 65.2% 65.2% 360_812del
5 human 100132565 GOLGA8F golgin A8 family member F XM_024449810.1 62.7% 62.7% 360_863del
6 human 100132565 GOLGA8F golgin A8 family member F XM_024449811.1 62.7% 62.7% 360_863del
7 human 283768 GOLGA8G golgin A8 family member G XM_024449906.1 62.7% 62.7% 360_863del
8 human 283768 GOLGA8G golgin A8 family member G XM_024449907.1 62.7% 62.7% 360_863del
9 human 653061 GOLGA8S golgin A8 family member S NM_001355465.1 59.2% 54.4% (many diffs)
10 human 653061 GOLGA8S golgin A8 family member S XM_024450030.1 59.2% 54.4% (many diffs)
11 human 23015 GOLGA8A golgin A8 family member A XM_017022020.2 55.6% 50.5% (many diffs)
12 human 653720 GOLGA8M golgin A8 family member M XM_011521951.3 52.1% 47.2% (many diffs)
13 human 653720 GOLGA8M golgin A8 family member M XM_011521954.3 52.1% 47.2% (many diffs)
14 human 653720 GOLGA8M golgin A8 family member M XM_024450037.1 52.1% 47.2% (many diffs)
15 human 653075 GOLGA8T golgin A8 family member T XM_024450034.1 51.7% 46% (many diffs)
16 human 653075 GOLGA8T golgin A8 family member T XM_024450035.1 51.7% 46% (many diffs)
17 human 728047 GOLGA8O golgin A8 family member O XM_024450042.1 51% 44.7% (many diffs)
18 human 653720 GOLGA8M golgin A8 family member M XM_024450036.1 45.5% 41.2% (many diffs)
19 human 653075 GOLGA8T golgin A8 family member T XM_024450033.1 45.1% 40.2% (many diffs)
20 human 283768 GOLGA8G golgin A8 family member G NM_001350919.2 43.6% 43.6% 1_654del;1014_1454del
21 human 100132565 GOLGA8F golgin A8 family member F NM_001350920.1 43.6% 43.6% 1_654del;1014_1454del
22 human 23015 GOLGA8A golgin A8 family member A NM_001368071.2 42.4% 38.5% (many diffs)
23 human 23015 GOLGA8A golgin A8 family member A NM_001368072.1 42.4% 38.5% (many diffs)
24 human 100132565 GOLGA8F golgin A8 family member F XM_024449809.1 42.3% 42.3% 1_651del;1011_1514del
25 human 283768 GOLGA8G golgin A8 family member G XM_024449905.1 42.3% 42.3% 1_651del;1011_1514del
26 human 23015 GOLGA8A golgin A8 family member A NM_181077.4 42.3% 38.4% (many diffs)
27 human 100132565 GOLGA8F golgin A8 family member F XM_024449808.1 42.3% 42.3% 1_654del;1014_1517del
28 human 283768 GOLGA8G golgin A8 family member G XM_024449904.1 42.3% 42.3% 1_654del;1014_1517del
29 human 440270 GOLGA8B golgin A8 family member B NM_001023567.5 42.2% 38.3% (many diffs)
30 human 653720 GOLGA8M golgin A8 family member M XM_006720654.3 40.6% 36.7% (many diffs)
31 human 728047 GOLGA8O golgin A8 family member O XM_011521988.3 40.4% 35.3% (many diffs)
32 human 653073 GOLGA8J golgin A8 family member J XM_006720651.3 40.3% 36.1% (many diffs)
33 human 653075 GOLGA8T golgin A8 family member T XM_024450032.1 40.2% 35.8% (many diffs)
34 human 653720 GOLGA8M golgin A8 family member M NM_001282468.1 39.8% 36% (many diffs)
35 human 653073 GOLGA8J golgin A8 family member J NM_001282472.1 39.5% 35.3% (many diffs)
36 human 728498 GOLGA8H golgin A8 family member H NM_001282490.1 39.5% 35.3% (many diffs)
37 human 653125 GOLGA8K golgin A8 family member K NM_001282493.1 39.4% 35.3% (many diffs)
38 human 653075 GOLGA8T golgin A8 family member T NM_001355469.1 39.4% 35.1% (many diffs)
39 human 728047 GOLGA8O golgin A8 family member O NM_001277308.1 38.9% 34.1% (many diffs)
40 human 643699 GOLGA8N golgin A8 family member N NM_001282494.1 38.9% 34.1% (many diffs)
41 human 727909 GOLGA8Q golgin A8 family member Q NM_001355476.1 38.9% 33.9% (many diffs)
42 human 101059918 GOLGA8R golgin A8 family member R NM_001282484.1 38.7% 33.6% (many diffs)
43 human 653720 GOLGA8M golgin A8 family member M XM_005268285.5 38.1% 34.7% (many diffs)
44 human 653720 GOLGA8M golgin A8 family member M XM_005268284.5 37.1% 33.5% (many diffs)
45 human 100132565 GOLGA8F golgin A8 family member F XR_002957623.1 26.4% 1_716del;1076_1424del;1571_1572ins343
46 human 283768 GOLGA8G golgin A8 family member G XR_002957634.1 26.4% 1_716del;1076_1424del;1571_1572ins343
47 human 100132565 GOLGA8F golgin A8 family member F NR_033351.1 18.8% 1_1015del;1375_1815del;2306_4511del
48 human 390535 GOLGA8EP golgin A8 family member E, ... NR_033350.1 16% (many diffs)
49 human 729786 GOLGA8CP golgin A8 family member C, ... NR_027411.2 15.9% (many diffs)
50 human 100132979 GOLGA8DP golgin A8 family member D, ... NR_027407.1 15.8% (many diffs)
51 human 440270 GOLGA8B golgin A8 family member B NR_027410.1 11.7% (many diffs)
52 human 23015 GOLGA8A golgin A8 family member A NR_027409.2 11.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
918
ORF length:
849
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggagtggaag ttagagcagt ccatgcggga gcaggcactg ctgaaagcgc
121agctgacaca gttgaaggag tcacttaaag aagtccagct agagagggat gaatatgctg
181aacatctaaa aggagagagg gcccggtggc agcagaggat gagaaaaatg tcgcaggagg
241tttgctcgtt gaagaaggag aagaagcatg ataaatatcg ggtagagaag ctggagagga
301gcttgtccaa actcaaacac cagatggctg aacctctgcc cccggagccc ccagcagtgc
361cctctgaggt ggagctgcag cacctgagga aggaactaga gagagtggca ggagagctcc
421aggcccaggt ggagaaagaa gaacttggat tcttccagta ctacagagag agatgccatc
481agaaagttta tcaccctata acaaagccag ggggcagtgc caaagatgca gcaccgggag
541gaggacacca tcaggctggc cctggacagg gaggagatga aggtgaagct gctggagctg
601caggagatgg tgttgcagct ggtggcgact acaagggaca cagcaaattc ttggtgactg
661cccagaaccc tgctcatgag cccagtccag gagccccagc cccccaggag cttggggctg
721cccacaagca tggtgatctt tgtgaggtga gcctcactga cagcgtggag cctgtgcaag
781gagaggccag ggagggttct ccccacgaca accctactgc acagccgatc gtgcaggacc
841accaggagca cccaggcttg ggcagcaact gctgtgtgcc attcttttgc tgggcttggc
901tgccaagaag aaggagatnn ccaactttct tgtacaaagt ggttggtaag cctatcccta
961accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1021agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)