Construct: ORF ccsbBroadEn_00908
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015111.1_s300c1, BRDN0000398455
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KIR3DS1 (3813)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001083539.2 | 100% | 100% | |
| 2 | human | 112268355 | LOC112268355 | killer cell immunoglobulin-... | NM_001368254.1 | 100% | 100% | |
| 3 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_013289.2 | 84.4% | 79.1% | (many diffs) |
| 4 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_001322168.1 | 84.3% | 78.8% | (many diffs) |
| 5 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_017026784.2 | 82.2% | 74% | (many diffs) |
| 6 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_011526940.3 | 80% | 62% | (many diffs) |
| 7 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_006737.4 | 77.4% | 68.7% | (many diffs) |
| 8 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282170.1 | 75.1% | 75.1% | 69_70ins285 |
| 9 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_001242867.2 | 73.8% | 65% | (many diffs) |
| 10 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | XM_017030274.1 | 73.5% | 58.8% | (many diffs) |
| 11 | human | 115653 | KIR3DL3 | killer cell immunoglobulin ... | NM_153443.4 | 73.2% | 60% | (many diffs) |
| 12 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282171.1 | 69.5% | 68.9% | (many diffs) |
| 13 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_012312.4 | 66.5% | 57.5% | (many diffs) |
| 14 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | XM_017030275.2 | 66.5% | 57.5% | (many diffs) |
| 15 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | NM_014512.1 | 65.4% | 56% | (many diffs) |
| 16 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_011547998.2 | 65.4% | 56% | (many diffs) |
| 17 | human | 3810 | KIR2DS5 | killer cell immunoglobulin ... | NM_014513.2 | 65.1% | 57.3% | (many diffs) |
| 18 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_012314.6 | 65.1% | 55.8% | (many diffs) |
| 19 | human | 102725023 | LOC102725023 | killer cell immunoglobulin-... | NM_001360171.1 | 64.9% | 56.1% | (many diffs) |
| 20 | human | 3808 | KIR2DS3 | killer cell immunoglobulin ... | NM_012313.1 | 64.8% | 55.8% | (many diffs) |
| 21 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291701.1 | 62.6% | 54% | (many diffs) |
| 22 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291695.1 | 61.3% | 53% | (many diffs) |
| 23 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_001080772.2 | 60.7% | 51.5% | (many diffs) |
| 24 | human | 3804 | KIR2DL3 | killer cell immunoglobulin ... | NM_015868.3 | 60% | 50.6% | (many diffs) |
| 25 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452542.1 | 59.4% | 51.3% | (many diffs) |
| 26 | human | 3803 | KIR2DL2 | killer cell immunoglobulin ... | NM_014219.2 | 58.9% | 50.8% | (many diffs) |
| 27 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | NM_014218.3 | 58.3% | 50% | (many diffs) |
| 28 | human | 112267881 | LOC112267881 | killer cell immunoglobulin-... | NM_001368251.1 | 58.1% | 49.7% | (many diffs) |
| 29 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026783.1 | 57.8% | 51% | (many diffs) |
| 30 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281971.2 | 55.8% | 34.2% | (many diffs) |
| 31 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_017030286.1 | 55.2% | 46.2% | (many diffs) |
| 32 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_011526939.2 | 55.1% | 45.7% | (many diffs) |
| 33 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452543.1 | 53.1% | 45.9% | (many diffs) |
| 34 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452544.1 | 53.1% | 45.9% | (many diffs) |
| 35 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452545.1 | 53.1% | 45.9% | (many diffs) |
| 36 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281972.2 | 51.7% | 35.3% | (many diffs) |
| 37 | human | 57292 | KIR2DL5A | killer cell immunoglobulin ... | NM_020535.3 | 51.5% | 42.2% | (many diffs) |
| 38 | human | 553128 | KIR2DL5B | killer cell immunoglobulin ... | NM_001018081.1 | 51.1% | 42.3% | (many diffs) |
| 39 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_002255.6 | 50.8% | 41.4% | (many diffs) |
| 40 | human | 112268354 | LOC112268354 | killer cell immunoglobulin-... | NM_001368253.1 | 50.7% | 41.2% | (many diffs) |
| 41 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026782.1 | 47.3% | 40.8% | (many diffs) |
| 42 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291696.1 | 42.5% | 35% | (many diffs) |
| 43 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291700.1 | 19.7% | 12.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1215
- ORF length:
- 1146
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTGCTCATG GTCGTCAGCA TGGCGTGTGT TGGGTTGTTC TTGGTCCAGA 121 GGGCCGGTCC ACACATGGGT GGTCAGGACA AGCCCTTCCT GTCTGCCTGG CCCAGCGCTG 181 TGGTGCCTCG CGGAGGACAC GTGACTCTTC GGTGTCACTA TCGTCATAGG TTTAACAATT 241 TCATGCTATA CAAAGAAGAC AGAATCCACG TTCCCATCTT CCATGGCAGA ATATTCCAGG 301 AGGGCTTCAA CATGAGCCCT GTGACCACAG CACATGCAGG GAACTACACA TGTCGGGGTT 361 CACACCCACA CTCCCCCACT GGGTGGTCGG CACCCAGCAA CCCCATGGTG ATCATGGTCA 421 CAGGAAACCA CAGAAAACCT TCCCTCCTGG CCCACCCAGG TCCCCTGGTG AAATCAGGAG 481 AGAGAGTCAT CCTGCAATGT TGGTCAGATA TCATGTTTGA GCACTTCTTT CTGCACAAAG 541 AGTGGATCTC TAAGGACCCC TCACGCCTCG TTGGACAGAT CCATGATGGG GTCTCCAAGG 601 CCAATTTCTC CATCGGTTCC ATGATGCGTG CCCTTGCAGG GACCTACAGA TGCTACGGTT 661 CTGTTACTCA CACCCCCTAT CAGTTGTCAG CTCCCAGTGA TCCCCTGGAC ATCGTGGTCA 721 CAGGTCTATA TGAGAAACCT TCTCTCTCAG CCCAGCCGGG CCCCAAGGTT CAGGCAGGAG 781 AGAGCGTGAC CTTGTCCTGT AGCTCCCGGA GCTCCTATGA CATGTACCAT CTATCCAGGG 841 AGGGGGGAGC CCATGAACGT AGGCTCCCTG CAGTGCGCAA GGTCAACAGA ACATTCCAGG 901 CAGATTTCCC TCTGGGCCCT GCCACCCACG GAGGGACCTA CAGATGCTTC GGCTCTTTCC 961 GTCACTCTCC CTACGAGTGG TCAGACCCGA GTGACCCACT GCTTGTTTCT GTCACAGGAA 1021 ACCCTTCAAG TAGTTGGCCT TCACCCACAG AACCAAGCTC CAAATCTGGT AACCTCAGAC 1081 ACCTGCACAT TCTGATTGGG ACCTCAGTGG TCAAAATCCC TTTCACCATC CTCCTCTTCT 1141 TTCTCCTTCA TCGCTGGTGC TCCAACAAAA AAAAATGCTG CTGTAATGGA CCAAGAGCCT 1201 GCAGGGAACA GAAGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1261 tatcaatttg ttgcaacgaa c