Construct: ORF ccsbBroadEn_00908

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015111.1_s300c1, BRDN0000398455
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KIR3DS1 (3813)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3813 KIR3DS1 killer cell immunoglobulin ... NM_001083539.2 100% 100%
2 human 112268355 LOC112268355 killer cell immunoglobulin-... NM_001368254.1 100% 100%
3 human 3811 KIR3DL1 killer cell immunoglobulin ... NM_013289.2 84.4% 79.1% (many diffs)
4 human 3811 KIR3DL1 killer cell immunoglobulin ... NM_001322168.1 84.3% 78.8% (many diffs)
5 human 3812 KIR3DL2 killer cell immunoglobulin ... XM_017026784.2 82.2% 74% (many diffs)
6 human 3812 KIR3DL2 killer cell immunoglobulin ... XM_011526940.3 80% 62% (many diffs)
7 human 3812 KIR3DL2 killer cell immunoglobulin ... NM_006737.4 77.4% 68.7% (many diffs)
8 human 3813 KIR3DS1 killer cell immunoglobulin ... NM_001282170.1 75.1% 75.1% 69_70ins285
9 human 3812 KIR3DL2 killer cell immunoglobulin ... NM_001242867.2 73.8% 65% (many diffs)
10 human 3811 KIR3DL1 killer cell immunoglobulin ... XM_017030274.1 73.5% 58.8% (many diffs)
11 human 115653 KIR3DL3 killer cell immunoglobulin ... NM_153443.4 73.2% 60% (many diffs)
12 human 3813 KIR3DS1 killer cell immunoglobulin ... NM_001282171.1 69.5% 68.9% (many diffs)
13 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_012312.4 66.5% 57.5% (many diffs)
14 human 100132285 KIR2DS2 killer cell immunoglobulin ... XM_017030275.2 66.5% 57.5% (many diffs)
15 human 3806 KIR2DS1 killer cell immunoglobulin ... NM_014512.1 65.4% 56% (many diffs)
16 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_011547998.2 65.4% 56% (many diffs)
17 human 3810 KIR2DS5 killer cell immunoglobulin ... NM_014513.2 65.1% 57.3% (many diffs)
18 human 3809 KIR2DS4 killer cell immunoglobulin ... NM_012314.6 65.1% 55.8% (many diffs)
19 human 102725023 LOC102725023 killer cell immunoglobulin-... NM_001360171.1 64.9% 56.1% (many diffs)
20 human 3808 KIR2DS3 killer cell immunoglobulin ... NM_012313.1 64.8% 55.8% (many diffs)
21 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_001291701.1 62.6% 54% (many diffs)
22 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_001291695.1 61.3% 53% (many diffs)
23 human 3805 KIR2DL4 killer cell immunoglobulin ... NM_001080772.2 60.7% 51.5% (many diffs)
24 human 3804 KIR2DL3 killer cell immunoglobulin ... NM_015868.3 60% 50.6% (many diffs)
25 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_024452542.1 59.4% 51.3% (many diffs)
26 human 3803 KIR2DL2 killer cell immunoglobulin ... NM_014219.2 58.9% 50.8% (many diffs)
27 human 3802 KIR2DL1 killer cell immunoglobulin ... NM_014218.3 58.3% 50% (many diffs)
28 human 112267881 LOC112267881 killer cell immunoglobulin-... NM_001368251.1 58.1% 49.7% (many diffs)
29 human 3802 KIR2DL1 killer cell immunoglobulin ... XM_017026783.1 57.8% 51% (many diffs)
30 human 3809 KIR2DS4 killer cell immunoglobulin ... NM_001281971.2 55.8% 34.2% (many diffs)
31 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_017030286.1 55.2% 46.2% (many diffs)
32 human 3802 KIR2DL1 killer cell immunoglobulin ... XM_011526939.2 55.1% 45.7% (many diffs)
33 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_024452543.1 53.1% 45.9% (many diffs)
34 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_024452544.1 53.1% 45.9% (many diffs)
35 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_024452545.1 53.1% 45.9% (many diffs)
36 human 3809 KIR2DS4 killer cell immunoglobulin ... NM_001281972.2 51.7% 35.3% (many diffs)
37 human 57292 KIR2DL5A killer cell immunoglobulin ... NM_020535.3 51.5% 42.2% (many diffs)
38 human 553128 KIR2DL5B killer cell immunoglobulin ... NM_001018081.1 51.1% 42.3% (many diffs)
39 human 3805 KIR2DL4 killer cell immunoglobulin ... NM_002255.6 50.8% 41.4% (many diffs)
40 human 112268354 LOC112268354 killer cell immunoglobulin-... NM_001368253.1 50.7% 41.2% (many diffs)
41 human 3802 KIR2DL1 killer cell immunoglobulin ... XM_017026782.1 47.3% 40.8% (many diffs)
42 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_001291696.1 42.5% 35% (many diffs)
43 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_001291700.1 19.7% 12.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1215
ORF length:
1146
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTGCTCATG GTCGTCAGCA TGGCGTGTGT TGGGTTGTTC TTGGTCCAGA
121GGGCCGGTCC ACACATGGGT GGTCAGGACA AGCCCTTCCT GTCTGCCTGG CCCAGCGCTG
181TGGTGCCTCG CGGAGGACAC GTGACTCTTC GGTGTCACTA TCGTCATAGG TTTAACAATT
241TCATGCTATA CAAAGAAGAC AGAATCCACG TTCCCATCTT CCATGGCAGA ATATTCCAGG
301AGGGCTTCAA CATGAGCCCT GTGACCACAG CACATGCAGG GAACTACACA TGTCGGGGTT
361CACACCCACA CTCCCCCACT GGGTGGTCGG CACCCAGCAA CCCCATGGTG ATCATGGTCA
421CAGGAAACCA CAGAAAACCT TCCCTCCTGG CCCACCCAGG TCCCCTGGTG AAATCAGGAG
481AGAGAGTCAT CCTGCAATGT TGGTCAGATA TCATGTTTGA GCACTTCTTT CTGCACAAAG
541AGTGGATCTC TAAGGACCCC TCACGCCTCG TTGGACAGAT CCATGATGGG GTCTCCAAGG
601CCAATTTCTC CATCGGTTCC ATGATGCGTG CCCTTGCAGG GACCTACAGA TGCTACGGTT
661CTGTTACTCA CACCCCCTAT CAGTTGTCAG CTCCCAGTGA TCCCCTGGAC ATCGTGGTCA
721CAGGTCTATA TGAGAAACCT TCTCTCTCAG CCCAGCCGGG CCCCAAGGTT CAGGCAGGAG
781AGAGCGTGAC CTTGTCCTGT AGCTCCCGGA GCTCCTATGA CATGTACCAT CTATCCAGGG
841AGGGGGGAGC CCATGAACGT AGGCTCCCTG CAGTGCGCAA GGTCAACAGA ACATTCCAGG
901CAGATTTCCC TCTGGGCCCT GCCACCCACG GAGGGACCTA CAGATGCTTC GGCTCTTTCC
961GTCACTCTCC CTACGAGTGG TCAGACCCGA GTGACCCACT GCTTGTTTCT GTCACAGGAA
1021ACCCTTCAAG TAGTTGGCCT TCACCCACAG AACCAAGCTC CAAATCTGGT AACCTCAGAC
1081ACCTGCACAT TCTGATTGGG ACCTCAGTGG TCAAAATCCC TTTCACCATC CTCCTCTTCT
1141TTCTCCTTCA TCGCTGGTGC TCCAACAAAA AAAAATGCTG CTGTAATGGA CCAAGAGCCT
1201GCAGGGAACA GAAGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1261tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)