Construct: ORF ccsbBroadEn_01257

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017275.1_s300c1, BRDN0000389053
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPOX (5498)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5498 PPOX protoporphyrinogen oxidase NM_000309.5 100% 100%
2 human 5498 PPOX protoporphyrinogen oxidase NM_001122764.3 100% 100%
3 human 5498 PPOX protoporphyrinogen oxidase NM_001365398.1 100% 100%
4 human 5498 PPOX protoporphyrinogen oxidase XM_011509671.1 92.6% 92.6% 1_114del
5 human 5498 PPOX protoporphyrinogen oxidase NM_001365399.1 92.2% 92.2% 987_988ins111
6 human 5498 PPOX protoporphyrinogen oxidase XM_006711404.4 91.7% 91.7% 1_114del;336_350del
7 human 5498 PPOX protoporphyrinogen oxidase NM_001350128.2 90.7% 90% (many diffs)
8 human 5498 PPOX protoporphyrinogen oxidase XM_017001559.1 84.6% 84.6% 1_114del;336_350del;1116_1117ins111
9 human 5498 PPOX protoporphyrinogen oxidase XM_011509672.3 84.1% 83.4% (many diffs)
10 human 5498 PPOX protoporphyrinogen oxidase XM_005245291.4 83.6% 80.6% (many diffs)
11 human 5498 PPOX protoporphyrinogen oxidase XM_006711403.2 83.6% 80.6% (many diffs)
12 human 5498 PPOX protoporphyrinogen oxidase XM_006711402.2 82.8% 79.9% (many diffs)
13 human 5498 PPOX protoporphyrinogen oxidase XM_011509667.2 82.8% 79.9% (many diffs)
14 human 5498 PPOX protoporphyrinogen oxidase XM_011509668.2 82.8% 79.9% (many diffs)
15 human 5498 PPOX protoporphyrinogen oxidase XM_011509665.2 80.8% 78.8% (many diffs)
16 human 5498 PPOX protoporphyrinogen oxidase XM_011509664.1 78.1% 75.2% (many diffs)
17 human 5498 PPOX protoporphyrinogen oxidase XM_011509663.2 77.4% 74.6% (many diffs)
18 human 5498 PPOX protoporphyrinogen oxidase XM_024447864.1 76.5% 76.5% 1_114del;335_336ins249
19 human 5498 PPOX protoporphyrinogen oxidase XR_921850.2 71.8% (many diffs)
20 human 5498 PPOX protoporphyrinogen oxidase XM_011509666.2 71.1% 68.1% (many diffs)
21 human 5498 PPOX protoporphyrinogen oxidase XM_011509670.2 70.7% 67% (many diffs)
22 human 5498 PPOX protoporphyrinogen oxidase NM_001350129.2 69.2% 67% 0_1ins427;43_61del
23 human 5498 PPOX protoporphyrinogen oxidase NM_001365400.1 69.2% 67% 0_1ins427;43_61del
24 human 5498 PPOX protoporphyrinogen oxidase XM_017001566.2 69.2% 67% 0_1ins427;43_61del
25 human 5498 PPOX protoporphyrinogen oxidase XM_017001567.1 69.2% 67% 0_1ins427;43_61del
26 human 5498 PPOX protoporphyrinogen oxidase XM_024447867.1 69.2% 67% 0_1ins427;43_61del
27 human 5498 PPOX protoporphyrinogen oxidase NM_001350130.2 66% 66% 0_1ins486
28 human 5498 PPOX protoporphyrinogen oxidase NM_001350131.2 66% 66% 0_1ins486
29 human 5498 PPOX protoporphyrinogen oxidase NM_001365401.1 66% 66% 0_1ins486
30 human 5498 PPOX protoporphyrinogen oxidase XM_011509673.2 63.8% 60.6% (many diffs)
31 human 5498 PPOX protoporphyrinogen oxidase XM_011509674.2 60.8% 57.6% (many diffs)
32 human 5498 PPOX protoporphyrinogen oxidase XM_005245295.3 56.6% 51.1% (many diffs)
33 human 5498 PPOX protoporphyrinogen oxidase XM_006711406.2 56.6% 51.1% (many diffs)
34 human 5498 PPOX protoporphyrinogen oxidase XM_011509678.1 56.6% 51.1% (many diffs)
35 human 5498 PPOX protoporphyrinogen oxidase XM_011509679.1 56.6% 51.1% (many diffs)
36 human 5498 PPOX protoporphyrinogen oxidase XM_017001562.1 56.6% 51.1% (many diffs)
37 human 5498 PPOX protoporphyrinogen oxidase XM_024447865.1 56.6% 51.1% (many diffs)
38 human 5498 PPOX protoporphyrinogen oxidase XM_024447866.1 56.6% 51.1% (many diffs)
39 human 5498 PPOX protoporphyrinogen oxidase XM_011509681.1 53.6% 50% (many diffs)
40 human 5498 PPOX protoporphyrinogen oxidase XM_017001563.2 53.6% 50% (many diffs)
41 human 5498 PPOX protoporphyrinogen oxidase XM_017001564.1 53.6% 50% (many diffs)
42 human 5498 PPOX protoporphyrinogen oxidase XM_011509682.1 40.3% 36.3% (many diffs)
43 human 5498 PPOX protoporphyrinogen oxidase XM_017001570.1 40.3% 36.3% (many diffs)
44 mouse 19044 Ppox protoporphyrinogen oxidase NM_008911.2 85.2% 88.6% (many diffs)
45 mouse 19044 Ppox protoporphyrinogen oxidase XM_006496707.3 85.2% 88.6% (many diffs)
46 mouse 19044 Ppox protoporphyrinogen oxidase XM_011238772.2 76.3% 76.5% (many diffs)
47 mouse 19044 Ppox protoporphyrinogen oxidase XM_011238773.2 76.3% 76.5% (many diffs)
48 mouse 19044 Ppox protoporphyrinogen oxidase XM_006496709.3 69.6% 72.3% (many diffs)
49 mouse 19044 Ppox protoporphyrinogen oxidase XM_011238775.2 56.2% 57.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1497
ORF length:
1431
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CCGGACCGTG GTCGTGCTGG GCGGAGGCAT CAGCGGCTTG GCCGCCAGTT
121ACCACCTGAG CCGGGCCCCC TGCCCCCCTA AGGTGGTCCT AGTGGAGAGC AGTGAGCGTC
181TGGGAGGCTG GATTCGCTCC GTTCGAGGCC CTAATGGTGC TATCTTTGAG CTTGGACCTC
241GGGGAATTAG GCCAGCGGGA GCCCTAGGGG CCCGGACCTT GCTCCTGGTT TCTGAGCTTG
301GCTTGGATTC AGAAGTGCTG CCTGTCCGGG GAGACCACCC AGCTGCCCAG AACAGGTTCC
361TCTACGTGGG CGGTGCCCTG CATGCCCTAC CCACTGGCCT CAGGGGGCTA CTCCGCCCTT
421CACCCCCCTT CTCCAAACCT CTGTTTTGGG CTGGGCTGAG GGAGCTGACC AAGCCCCGGG
481GCAAAGAGCC TGATGAGACT GTGCACAGTT TTGCCCAGCG CCGCCTTGGA CCTGAGGTGG
541CGTCTCTAGC CATGGACAGT CTCTGCCGTG GAGTGTTTGC AGGCAACAGC CGTGAGCTCA
601GCATCAGGTC CTGCTTTCCC AGTCTCTTCC AAGCTGAGCA AACCCATCGT TCCATATTAC
661TGGGCCTGCT GCTGGGGGCA GGGCGGACCC CACAGCCAGA CTCAGCACTC ATTCGCCAGG
721CCTTGGCTGA GCGCTGGAGC CAGTGGTCAC TTCGTGGAGG TCTAGAGATG TTGCCTCAGG
781CCCTTGAAAC CCACCTGACT AGTAGGGGGG TCAGTGTTCT CAGAGGCCAG CCGGTCTGTG
841GGCTCAGCCT CCAGGCAGAA GGGCGCTGGA AGGTATCTCT AAGGGACAGC AGTCTGGAGG
901CTGACCACGT TATTAGTGCC ATTCCAGCTT CAGTGCTCAG TGAGCTGCTC CCTGCTGAGG
961CTGCCCCTCT GGCTCGTGCC CTGAGTGCCA TCACTGCAGT GTCTGTAGCT GTGGTGAATC
1021TGCAGTACCA AGGAGCCCAT CTGCCTGTCC AGGGATTTGG ACATTTGGTG CCATCTTCAG
1081AAGATCCAGG AGTCCTGGGA ATCGTGTATG ACTCAGTTGC TTTCCCTGAG CAGGACGGGA
1141GCCCCCCTGG CCTCAGAGTG ACTGTGATGC TGGGAGGTTC CTGGTTACAG ACACTGGAGG
1201CTAGTGGCTG TGTCTTATCT CAGGAGCTGT TTCAACAGCG GGCCCAGGAA GCAGCTGCTA
1261CACAATTAGG ACTGAAGGAG ATGCCGAGCC ACTGCTTGGT CCATCTACAC AAGAACTGCA
1321TTCCCCAGTA TACACTAGGT CACTGGCAAA AACTAGAGTC AGCTAGGCAA TTCCTGACTG
1381CTCACAGGTT GCCCCTGACT CTGGCTGGAG CCTCCTATGA GGGAGTTGCT GTTAATGACT
1441GTATAGAGAG TGGGCGCCAG GCAGCAGTCA GTGTCCTGGG CACAGAACCT AACAGCTGCC
1501CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1561aac

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