Construct: ORF ccsbBroadEn_02531

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013593.1_s300c1, BRDN0000385432
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HSPH1 (10808)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10808 HSPH1 heat shock protein family H... NM_006644.4 100% 100%
2 human 10808 HSPH1 heat shock protein family H... NM_001349704.2 98.4% 97.7% (many diffs)
3 human 10808 HSPH1 heat shock protein family H... NM_001286504.1 97.5% 95.9% (many diffs)
4 human 10808 HSPH1 heat shock protein family H... XM_011534887.3 96% 93.7% (many diffs)
5 human 10808 HSPH1 heat shock protein family H... NM_001286503.1 94.8% 94.8% 1584_1585ins132
6 human 10808 HSPH1 heat shock protein family H... XM_017020363.2 93.3% 92.6% (many diffs)
7 human 10808 HSPH1 heat shock protein family H... XM_005266236.2 92.4% 90.8% (many diffs)
8 human 10808 HSPH1 heat shock protein family H... XM_017020362.2 90.9% 88.7% (many diffs)
9 human 10808 HSPH1 heat shock protein family H... XM_011534888.2 90.9% 90.9% 429_430ins234
10 human 10808 HSPH1 heat shock protein family H... NM_001286505.1 88.5% 86.9% (many diffs)
11 human 10808 HSPH1 heat shock protein family H... XM_017020364.2 85.7% 85.7% 429_430ins234;1350_1351ins132
12 mouse 15505 Hsph1 heat shock 105kDa/110kDa pr... NM_013559.2 86.2% 93.3% (many diffs)
13 mouse 15505 Hsph1 heat shock 105kDa/110kDa pr... XM_006504916.2 82.9% 87.7% (many diffs)
14 mouse 15505 Hsph1 heat shock 105kDa/110kDa pr... NM_001347534.1 81.5% 88.7% (many diffs)
15 mouse 15505 Hsph1 heat shock 105kDa/110kDa pr... XM_006504915.3 76.4% 82.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2640
ORF length:
2574
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GGTGGTGGGG TTGGACGTGG GCTCGCAGAG CTGCTACATC GCGGTAGCCC
121GGGCCGGGGG CATCGAGACC ATCGCCAATG AGTTCAGCGA CCGGTGCACC CCGTCAGTCA
181TATCATTTGG ATCAAAAAAT AGAACAATCG GAGTTGCAGC CAAAAATCAG CAAATCACTC
241ATGCAAACAA TACGGTGTCT AACTTCAAAA GATTTCATGG CCGAGCATTC AATGACCCCT
301TCATTCAAAA GGAGAAGGAA AACTTGAGTT ACGATTTGGT TCCATTGAAA AATGGTGGAG
361TTGGAATAAA GGTAATGTAC ATGGGTGAAG AACATCTATT TAGTGTGGAG CAGATAACAG
421CCATGTTGTT GACTAAGCTG AAGGAAACTG CTGAAAACAG CCTCAAGAAA CCAGTAACAG
481ATTGTGTTAT TTCAGTCCCC TCCTTCTTTA CAGATGCTGA GAGGCGATCT GTGTTAGATG
541CTGCACAGAT TGTTGGCCTA AACTGTTTAA GACTTATGAA TGACATGACA GCTGTTGCTT
601TGAATTACGG AATTTATAAG CAGGATCTCC CAAGCCTGGA TGAGAAACCT CGGATAGTGG
661TTTTTGTTGA TATGGGACAT TCAGCTTTTC AAGTGTCTGC TTGTGCTTTT AACAAGGGAA
721AATTGAAGGT ACTGGGAACA GCTTTTGATC CTTTCTTAGG AGGAAAAAAC TTCGATGAAA
781AGTTAGTGGA ACATTTTTGT GCAGAATTTA AAACTAAGTA CAAGTTGGAT GCAAAATCCA
841AAATACGAGC ACTCCTACGT CTGTATCAGG AATGTGAAAA ACTGAAAAAG CTAATGAGCT
901CTAACAGCAC AGACCTTCCA CTGAATATCG AATGCTTTAT GAATGATAAA GATGTTTCCG
961GAAAGATGAA CAGGTCACAA TTTGAAGAAC TCTGTGCTGA ACTTCTGCAA AAGATAGAAG
1021TACCCCTTTA TTCACTGTTG GAACAAACTC ATCTCAAAGT AGAAGATGTG AGTGCAGTTG
1081AGATTGTTGG AGGCGCTACA CGAATTCCAG CTGTGAAGGA AAGAATTGCC AAATTCTTTG
1141GAAAAGATAT TAGCACAACA CTCAATGCAG ATGAAGCAGT AGCCAGAGGA TGTGCATTAC
1201AGTGTGCAAT ACTTTCCCCG GCATTTAAAG TTAGAGAATT TTCCGTCACA GATGCAGTTC
1261CTTTTCCAAT ATCTCTGATC TGGAACCATG ATTCAGAAGA TACTGAAGGT GTTCATGAAG
1321TCTTTAGTCG AAACCATGCT GCTCCTTTCT CCAAAGTTCT CACCTTTCTG AGAAGGGGGC
1381CTTTTGAGCT AGAAGCTTTC TATTCTGATC CCCAAGGAGT TCCATATCCA GAAGCAAAAA
1441TAGGCCGCTT TGTAGTTCAG AATGTTTCTG CACAGAAAGA TGGAGAAAAA TCTAGAGTAA
1501AAGTCAAAGT GCGAGTCAAC ACCCATGGCA TTTTCACCAT CTCTACGGCA TCTATGGTGG
1561AGAAAGTCCC AACTGAGGAG AATGAAATGT CTTCTGAAGC TGACATGGAG TGTCTGAATC
1621AGAGACCACC AGAAAACCCA GACACTGATA AAAATGTCCA GCAAGACAAC AGTGAAGCTG
1681GAACACAGCC CCAGGTACAA ACTGATGCTC AACAAACCTC ACAGTCTCCC CCTTCACCTG
1741AACTTACCTC AGAAGAAAAC AAAATCCCAG ATGCTGACAA AGCAAATGAA AAAAAAGTTG
1801ACCAGCCTCC AGAAGCTAAA AAGCCCAAAA TAAAGGTGGT GAATGTTGAG CTGCCTATTG
1861AAGCCAACTT GGTCTGGCAG TTAGGGAAAG ACCTTCTTAA CATGTATATT GAGACAGAGG
1921GTAAGATGAT AATGCAAGAT AAATTGGAAA AAGAAAGGAA TGATGCTAAA AATGCAGTTG
1981AGGAATATGT GTATGAGTTC AGAGACAAGC TGTGTGGACC ATATGAAAAA TTTATATGTG
2041AGCAGGATCA TCAAAATTTT TTGAGACTCC TCACAGAAAC TGAAGACTGG CTGTATGAAG
2101AAGGAGAGGA CCAAGCTAAA CAAGCATATG TTGACAAGTT GGAAGAATTA ATGAAAATTG
2161GCACTCCAGT TAAAGTTCGG TTTCAGGAAG CTGAAGAACG GCCAAAAATG TTTGAAGAAC
2221TAGGACAGAG GCTGCAGCAT TATGCCAAGA TAGCAGCTGA CTTCAGAAAT AAGGATGAGA
2281AATACAACCA TATTGATGAG TCTGAAATGA AAAAAGTGGA GAAGTCTGTT AATGAAGTGA
2341TGGAATGGAT GAATAATGTC ATGAATGCTC AGGCTAAAAA GAGTCTTGAT CAGGATCCAG
2401TTGTACGTGC TCAGGAAATT AAAACAAAAA TCAAGGAATT GAACAACACA TGTGAACCCG
2461TTGTAACACA ACCGAAACCA AAAATTGAAT CACCCAAACT GGAAAGAACT CCAAATGGCC
2521CAAATATTGA TAAAAAGGAA GAAGATTTAG AAGACAAAAA CAATTTTGGT GCTGAACCTC
2581CACATCAGAA TGGTGAATGT TACCCTAATG AGAAAAATTC TGTTAATATG GACTTGGACT
2641ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
2701acgaac

Download FASTA (ORF) (Full)