Construct: ORF ccsbBroadEn_05120
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006319.1_s300c1, BRDN0000391432
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF320 (162967)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351773.1 | 100% | 100% | |
| 2 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351774.2 | 100% | 100% | |
| 3 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351775.2 | 100% | 100% | |
| 4 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351776.2 | 100% | 100% | |
| 5 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_207333.3 | 100% | 100% | |
| 6 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958279.1 | 62.2% | 1_201del;1729_2454del | |
| 7 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958278.1 | 62% | 1_208del;1736_2461del | |
| 8 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958277.1 | 61.3% | 1_237del;1765_2490del | |
| 9 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_006969.5 | 60% | 52.3% | (many diffs) |
| 10 | human | 7576 | ZNF28 | zinc finger protein 28 | XM_011527262.2 | 60% | 52.3% | (many diffs) |
| 11 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958275.1 | 59.2% | 1_324del;1852_2577del | |
| 12 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958276.1 | 59.1% | 1_328del;1856_2581del | |
| 13 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369764.1 | 58.3% | 50.8% | (many diffs) |
| 14 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_001753616.2 | 56.1% | 1_467del;1995_2720del | |
| 15 | human | 344787 | ZNF860 | zinc finger protein 860 | NM_001137674.3 | 50.9% | 47.8% | (many diffs) |
| 16 | human | 344787 | ZNF860 | zinc finger protein 860 | XM_017006299.1 | 50.9% | 47.8% | (many diffs) |
| 17 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 36.4% | (many diffs) | |
| 18 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 34.3% | (many diffs) | |
| 19 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 28.6% | (many diffs) | |
| 20 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 28% | (many diffs) | |
| 21 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 27.9% | (many diffs) | |
| 22 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 26.4% | (many diffs) | |
| 23 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369761.1 | 15.2% | 12.4% | (many diffs) |
| 24 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369766.1 | 15.1% | 12.2% | (many diffs) |
| 25 | human | 90333 | ZNF468 | zinc finger protein 468 | NM_001277120.2 | 15% | 10.6% | (many diffs) |
| 26 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451399.1 | 14.1% | 11% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1596
- ORF length:
- 1527
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTCTTTCT CAGGGTCTAC TGACATTCAG GGATGTGGCC ATAGAATTCT 121 CTCAGGAGGA GTGGAAATGC CTGGACCCTG CTCAGAGGAC TCTATACAGA GACGTGATGC 181 TGGAGAATTA TAGGAACCTG GTCTCCCTGG ATATCTCTTC CAAATGCATG ATGAATACAT 241 TGTCATCAAC AGGGCAAGGC AATACAGAAG TGATCCACAC AGGGACATTG CAGAGACAAG 301 CAAGTTATCA CATTGGAGCA TTTTGCTCCC AGGAAATTGA GAAAGACATT CATGACTTTG 361 TGTTTCAGTG GCAAGAAGAT GAAACAAATG ACCATGAAGC ACCCATGACA GAAATAAAAA 421 AGTTGACTAG TAGTACAGAC CGATATGATC AAAGGCATGC TGGAAACAAG CCTATTAAAG 481 GTCAGCTTGA ATCAAGATTT CATTTGCATT TGCGAAGACA TAGGAGAATT CATACTGGAG 541 AGAAACCTTA CAAATGTGAA GAATGTGAGA AAGTTTTCAG TTGCAAATCA CATCTTGAAA 601 TACATAGGAT AATTCATACT GGAGAGAAAC CATACAAATG TAAGGTTTGC GACAAGGCTT 661 TTAAGCATGA TTCACACCTG GCAAAACATA CTAGAATTCA CAGGGGAGAC AAACATTACA 721 CATGTAATGA ATGTGGCAAG GTTTTTGATC AAAAAGCAAC CCTTGCATGT CATCATAGAA 781 GTCATACTGG AGAGAAACCT TATAAGTGTA ATGAGTGTGG CAAGACCTTT AGTCAGACAT 841 CACACCTTGT GTACCATCAT AGACTGCATA CTGGAGAGAA ACCTTACAAA TGTAATGAGT 901 GTGGCAAGAC CTTCGCTCGA AATTCAGTCC TCGTAATTCA TAAGGCAGTT CATACTGCAG 961 AGAAACCCTA TAAGTGTAAT GAATGTGGCA AGGTTTTTAA GCAACGAGCA ACTCTTGCAG 1021 GACATCGTAG AGTTCACACT GGAGAGAAAC CTTACAGATG TGAAGAATGC GACAAAGTTT 1081 TCAGTCGCAA ATCACATCTT GAAAGACATA GGAGGATTCA TACTGGAGAG AAACCATACA 1141 AATGTAAGGT TTGTGACAAG GCTTTCCGGA GTGATTCACG TCTTGCAGAA CATCAGAGAG 1201 TTCATACTGG AGAGAGACCT TACACATGTA ATGAATGTGG CAAGGTTTTT AGTACAAAAG 1261 CGTACCTCGC ATGTCATCAA AAACTTCATA CTGGAGAGAA ACTTTACGAA TGTGAAGAAT 1321 GTGACAAAGT TTACATTCGC AAATCACACC TTGAAAGACA TAGGAGGATT CATACAGGAG 1381 AGAAACCTCA CAAGTGTGGT GATTGTGGTA AAGCCTTTAA TTCACCTTCA CACCTTATTA 1441 GGCATCAGAG AATCCATACT GGACAGAAAT CTTACAAATG TCATCAGTGT GGCAAGGTCT 1501 TTAGTCTGAG GTCACTCCTT GCAGAACATC AGAAAATTCC TTTTGGAGAC AATTGTTTCA 1561 AGTGCAATGA GTATAGCAAA CCATCAAGCA TTAATTTGCC AACTTTCTTG TACAAAGTtg 1621 gcattataag aaagcattgc ttatcaattt gttgcaacga ac