Construct: ORF ccsbBroadEn_08016

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015034.1_s300c1, BRDN0000391098
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEZ6L2 (26470)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26470 SEZ6L2 seizure related 6 homolog l... NM_001114100.3 99.9% 99.8% 221G>C
2 human 26470 SEZ6L2 seizure related 6 homolog l... NM_012410.4 89.4% 80% (many diffs)
3 human 26470 SEZ6L2 seizure related 6 homolog l... NM_001114099.3 87.9% 78.6% (many diffs)
4 human 26470 SEZ6L2 seizure related 6 homolog l... NM_001243332.1 87.6% 87.5% 221G>C;511_852del
5 human 26470 SEZ6L2 seizure related 6 homolog l... NM_201575.4 86.2% 86.1% 221G>C;511_852del;2485_2486ins39
6 human 26470 SEZ6L2 seizure related 6 homolog l... NM_001243333.1 82.8% 82.7% 78_79ins132;89G>C;379_720del
7 mouse 233878 Sez6l2 seizure related 6 homolog l... NM_001252567.1 78.6% 78.2% (many diffs)
8 mouse 233878 Sez6l2 seizure related 6 homolog l... NM_144926.5 77.6% 84.5% (many diffs)
9 mouse 233878 Sez6l2 seizure related 6 homolog l... NM_001252566.1 76.2% 83% (many diffs)
10 mouse 233878 Sez6l2 seizure related 6 homolog l... XM_006507737.2 73.5% 80.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2493
ORF length:
2427
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GACTCCCAGG GCCCAGCACC CGCCGCCTCC CCAGCTGCTG TTCCTAATTC
121TGCTGAGCTG TCCCTGGATC CAGGGTCTGC CCCTGAAGGA GGAGGAGATA TTGCCAGAGC
181CTGGAAGTGA GACCCCCACG GTGGCCTCTG AGGCCCTGGC TGAACTGCTT CATGGGGCCC
241TGCTGAGGAG GGGCCCAGAG ATGGGCTACC TGCCAGGATC TGATCCGGAC CCCACGCTAG
301CCACCCCTCC GGCCGGCCAG ACTCTCGCAG TGCCCTCCCT GCCACGGGCC ACTGAGCCGG
361GGACAGGGCC TCTGACAACA GCCGTCACCC CTAACGGGGT CAGGGGGGCA GGCCCCACTG
421CGCCAGAACT GCTGACCCCG CCCCCAGGAA CCACAGCCCC ACCCCCACCC AGCCCTGCCT
481CCCCAGGGCC TCCCCTTGGG CCTGAGGGAG GAGAGGAGGA GACGACGACC ACCATCATCA
541CCACGACAAC TGTTACCACT ACGGTGACCA GCCCAGCCTA CCTCCTGAGC TGTGGCTTCC
601CTCCCCGGCC GGCCCATGGG GACGTGAGTG TGACGGACCT GCACCCTGGG GGCACTGCCA
661CCTTTCACTG TGATTCGGGC TACCAGCTGC AGGGAGAGGA GACCCTCATC TGCCTCAATG
721GCACCCGGCC ATCCTGGAAC GGTGAAACCC CCAGCTGCAT GGCATCCTGT GGTGGCACCA
781TCCACAATGC CACCCTGGGC CGCATCGTGT CCCCAGAGCC TGGGGGAGCC GTAGGGCCCA
841ACCTCACCTG CCGTTGGGTC ATTGAAGCAG CTGAGGGGCG CCGGCTGCAC CTGCACTTTG
901AAAGGGTCTC GCTGGATGAG GACAATGACC GGCTGATGGT GCGCTCAGGG GGCAGCCCCC
961TATCCCCCGT GATCTATGAT TCGGACATGG ACGATGTCCC CGAGCGGGGT CTCATCAGTG
1021ACGCCCAGTC CCTCTACGTG GAGCTGCTGT CAGAGACACC TGCCAATCCC CTGCTGTTAA
1081GCCTTCGATT TGAAGCCTTT GAGGAGGATC GCTGCTTCGC CCCCTTCCTG GCACATGGAA
1141ATGTCACTAC CACGGACCCT GAGTATCGCC CAGGGGCACT GGCAACCTTC TCGTGCCTCC
1201CAGGATATGC CCTGGAGCCC CCTGGGCCCC CCAATGCCAT CGAATGTGTG GATCCCACAG
1261AACCCCACTG GAACGACACA GAGCCGGCCT GCAAAGCCAT GTGTGGAGGG GAGCTGTCGG
1321AACCAGCTGG CGTGGTCCTC TCTCCCGACT GGCCCCAGAG CTATAGCCCG GGCCAAGACT
1381GCGTGTGGGG CGTGCACGTC CAGGAAGAGA AGCGCATCTT GCTCCAAGTT GAGATATTGA
1441ATGTGCGGGA AGGGGACATG CTGACGCTGT TCGACGGGGA CGGTCCCAGC GCCCGAGTCT
1501TGGCCCAGCT GCGGGGACCT CAGCCGCGCC GCCGCCTTCT CTCCTCTGGG CCCGACCTCA
1561CACTGCAGTT TCAGGCACCG CCCGGGCCCC CAAATCCAGG CCTGGGCCAG GGCTTCGTAT
1621TGCACTTCAA AGAGGTCCCG AGGAACGACA CGTGCCCCGA GCTGCCACCT CCGGAGTGGG
1681GCTGGAGAAC GGCATCCCAC GGGGACCTGA TCCGGGGCAC GGTGCTCACC TACCAGTGCG
1741AGCCTGGCTA CGAGCTGCTA GGCTCCGACA TTCTCACTTG CCAGTGGGAC CTGTCTTGGA
1801GCGCCGCGCC GCCCGCCTGC CAAAAGATCA TGACTTGTGC TGACCCTGGC GAGATTGCCA
1861ACGGGCACCG CACCGCCTCG GACGCCGGCT TCCCCGTTGG CTCCCACGTC CAGTACCGCT
1921GCCTGCCAGG GTACAGCCTC GAGGGGGCAG CCATGCTCAC CTGCTACAGC CGGGACACAG
1981GCACACCCAA GTGGAGCGAT AGGGTCCCCA AATGCGCCTT GAAGTACGAG CCGTGCCTGA
2041ACCCGGGGGT TCCCGAGAAT GGCTACCAGA CGCTGTACAA GCACCACTAC CAGGCGGGCG
2101AGTCTCTGCG CTTCTTCTGC TATGAGGGCT TTGAGCTTAT CGGCGAGGTC ACCATCACCT
2161GTGTGCCCGG CCACCCCTCC CAGTGGACCA GCCAGCCCCC ACTCTGCAAA GTTGCCTATG
2221AGGAGCTCCT GGACAACCGA AAACTGGAAG TGACCCAGAC CACAGATCCA TCACGGCAGC
2281TGGAAGGGGG GAACCTGGCC CTGGCCATCC TGCTGCCTCT AGGCTTGGTC ATTGTCCTCG
2341GCAGTGGCGT TTACATCTAC TACACCAAGC TTCAGGGAAA GTCCCTTTTC GGCTTCTCGG
2401GCTCCCACTC CTACAGCCCC ATCACCGTGG AGTCGGACTT CAGCAACCCG CTGTATGAAG
2461CTGGGGATAC GCGGGAGTAT GAAGTTTCCA TCTGCCCAAC TTTCTTGTAC AAAGTtggca
2521ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)