Construct: ORF ccsbBroadEn_09418
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000376.1_s300c1, BRDN0000456362
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KIR3DL3 (115653)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 115653 | KIR3DL3 | killer cell immunoglobulin ... | NM_153443.4 | 99.3% | 99.2% | (many diffs) |
| 2 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_001242867.2 | 82% | 72.6% | (many diffs) |
| 3 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_001322168.1 | 80.4% | 70.2% | (many diffs) |
| 4 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_013289.2 | 80.2% | 70% | (many diffs) |
| 5 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_006737.4 | 79% | 70.1% | (many diffs) |
| 6 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_011526940.3 | 77.3% | 66.8% | (many diffs) |
| 7 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | XM_017030274.1 | 75.4% | 65.4% | (many diffs) |
| 8 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001083539.2 | 73% | 59.8% | (many diffs) |
| 9 | human | 112268355 | LOC112268355 | killer cell immunoglobulin-... | NM_001368254.1 | 73% | 59.8% | (many diffs) |
| 10 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_017026784.2 | 70.3% | 57.2% | (many diffs) |
| 11 | human | 3804 | KIR2DL3 | killer cell immunoglobulin ... | NM_015868.3 | 64.7% | 58% | (many diffs) |
| 12 | human | 3803 | KIR2DL2 | killer cell immunoglobulin ... | NM_014219.2 | 63% | 56.3% | (many diffs) |
| 13 | human | 112267881 | LOC112267881 | killer cell immunoglobulin-... | NM_001368251.1 | 62.8% | 56% | (many diffs) |
| 14 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | NM_014218.3 | 62.7% | 55.6% | (many diffs) |
| 15 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291701.1 | 61.9% | 55.1% | (many diffs) |
| 16 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_012312.4 | 59.5% | 52.9% | (many diffs) |
| 17 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | XM_017030275.2 | 59.5% | 52.9% | (many diffs) |
| 18 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | NM_014512.1 | 59.1% | 52.4% | (many diffs) |
| 19 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_011547998.2 | 59.1% | 52.4% | (many diffs) |
| 20 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_012314.6 | 58.9% | 51.2% | (many diffs) |
| 21 | human | 3810 | KIR2DS5 | killer cell immunoglobulin ... | NM_014513.2 | 58.5% | 51.7% | (many diffs) |
| 22 | human | 102725023 | LOC102725023 | killer cell immunoglobulin-... | NM_001360171.1 | 58% | 50.1% | (many diffs) |
| 23 | human | 3808 | KIR2DS3 | killer cell immunoglobulin ... | NM_012313.1 | 57.8% | 49.8% | (many diffs) |
| 24 | human | 57292 | KIR2DL5A | killer cell immunoglobulin ... | NM_020535.3 | 57.7% | 50.9% | (many diffs) |
| 25 | human | 553128 | KIR2DL5B | killer cell immunoglobulin ... | NM_001018081.1 | 57.3% | 49.8% | (many diffs) |
| 26 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291695.1 | 57.1% | 50.7% | (many diffs) |
| 27 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_002255.6 | 56.1% | 49% | (many diffs) |
| 28 | human | 112268354 | LOC112268354 | killer cell immunoglobulin-... | NM_001368253.1 | 56.1% | 49% | (many diffs) |
| 29 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282170.1 | 55.3% | 45.2% | (many diffs) |
| 30 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_001080770.2 | 54% | 45.8% | (many diffs) |
| 31 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282171.1 | 52.7% | 41.7% | (many diffs) |
| 32 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026782.1 | 51.4% | 45% | (many diffs) |
| 33 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_001080772.2 | 50.2% | 42.8% | (many diffs) |
| 34 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_017030286.1 | 49.3% | 41.4% | (many diffs) |
| 35 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_011526939.2 | 49.1% | 40.7% | (many diffs) |
| 36 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281971.2 | 48.3% | 30.6% | (many diffs) |
| 37 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452543.1 | 47.3% | 41.4% | (many diffs) |
| 38 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452544.1 | 47.3% | 41.4% | (many diffs) |
| 39 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452545.1 | 47.3% | 41.4% | (many diffs) |
| 40 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281972.2 | 47.1% | 31.7% | (many diffs) |
| 41 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291696.1 | 37.6% | 35.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1299
- ORF length:
- 1230
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCGCTCATG GTCGTCAGCA TGGCGTGTGT TGGGTTCTTC TTGCTGGAGG 121 GGCCCTGGCC ACATGTGGGT GGTCAGGACA AGCCCTTCCT CTCTGCCTGG CCCGGCACTG 181 TGGTGTCTGA AGGACAACAT GTGACTCTTC AGTGTCGCTC TCATCTTGGG TTTAACGAAT 241 TCAGTCTGTC CAAAGAAGAC GGGATGCCTG TCCCTGAGCT CTACAACAGA ATATTCCGGA 301 ACAGCTTTCT CATGGGCCCT GTGACCCCAG CACATGCAGG GACCTACAGA TGTTGCAGTT 361 CACACCCACA CTCCCCCACT GGGTGGTCGG CACCCAGCAA CCCTGTGGTG ATCATGGTCA 421 CAGGAGTCCA CAGAAAACCT TCCCTCCTGG CCCACCCAGG TCCCCTGGTG AAATCGGGAG 481 AGACGGTCAT CCTGCAATGT TGGTCAGATG TCAGGTTTGA GCGCTTCCTT CTGCACAGAG 541 AGGGGATCAC TGAGGACCCC TTGCGCCTCG TTGGACAGCT CCACGATGCG GGTTCCCAGG 601 TCAACTATTC CATGGGTCCC ATGACACCTG CCCTTGCAGG GACCTACAGA TGCTTTGGTT 661 CTGTCACTCA CTTACCCTAT GAGTTGTCGG CTCCCAGTGA CCCTCTGGAC ATCGTGGTCG 721 TAGGTCTATA TGGGAAACCT TCTCTCTCAG CCCAGCCGGG CCCCACGGTT CAGGCAGGAG 781 AGAATGTGAC CTTGTCCTGC AGCTCCCGGA GCTTGTTTGA CATTTACCAT CTATCCAGGG 841 AGGCAGAGGC CGGTGAACTT AGGCTCACTG CGGTGCTGAG GGTCAATGGA ACATTCCAGG 901 CCAACTTCCC TCTGGGCCCT GTGACCCACG GAGGGAACTA CAGATGCTTC GGCTCTTTCC 961 GTGCCCTGCC CCACGCGTGG TCAGACCCGA GTGACCCACT GCCCGTTTCT GTCACAGGTA 1021 ACTCCAGATA CCTGCACGCT CTGATTGGGA CCTCAGTGGT CATCATCCCC TTTGCTATCC 1081 TCCTCTTCTT TCTCCTTCAT CGCTGGTGTG CCAACAAAAA GAATGCTGTT GTAATGGACC 1141 AAGAGCCTGC AGGGAACAGA ACAGTGAACA GGGAGGACTC TGATGAACAA GACCCTCAGG 1201 AGGTGACATA CGCACAGTTG AATCACTGCG TTTTCACACA GAGAAAAATC ACTCGCCCTT 1261 CTCAGAGGCC CAAGACACCC CCAACAGATA CCAGCGTGTT GCCAACTTTT TTGTACAAAG 1321 TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac