Construct: ORF ccsbBroadEn_12714

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000920.1_s300c1, BRDN0000394696
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMPRSS5 (80975)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80975 TMPRSS5 transmembrane serine protea... NM_001288750.2 97% 96.9% 0_1ins36;970T>C;973T>C
2 human 80975 TMPRSS5 transmembrane serine protea... NM_001288751.1 94.6% 94.6% (many diffs)
3 human 80975 TMPRSS5 transmembrane serine protea... NM_030770.4 91.5% 91.9% (many diffs)
4 human 80975 TMPRSS5 transmembrane serine protea... NM_001288749.2 80.7% 80.7% (many diffs)
5 human 80975 TMPRSS5 transmembrane serine protea... NM_001288752.2 76.5% 76.8% (many diffs)
6 human 80975 TMPRSS5 transmembrane serine protea... NR_110047.2 62.3% (many diffs)
7 human 80975 TMPRSS5 transmembrane serine protea... NR_110046.2 61.1% (many diffs)
8 human 80975 TMPRSS5 transmembrane serine protea... XM_017018366.1 51.4% 47.5% (many diffs)
9 human 80975 TMPRSS5 transmembrane serine protea... XM_017018367.1 51.4% 47.5% (many diffs)
10 human 80975 TMPRSS5 transmembrane serine protea... XR_001747992.1 18.6% (many diffs)
11 human 80975 TMPRSS5 transmembrane serine protea... XR_001747990.1 18.2% (many diffs)
12 human 80975 TMPRSS5 transmembrane serine protea... XR_001747991.1 17.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1344
ORF length:
1275
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GATTGATGTT TCTCAGGCGG TGTGCTGGCG TTCCATGCGA CGTGGCTGTG
121CAGTGCTGGG AGCCCTGGGG CTGCTGGCCG GTGCAGGTGT TGGCTCATGG CTCCTAGTGC
181TGTATCTGTG TCCTGCTGCC TCTCAGCCCA TTTCCGGGAC CTTGCAGGAT GAGGAGATAA
241CTTTGAGCTG CTCAGAGGCC AGCGCTGAGG AAGCTCTGCT CCCTGCACTT CCCAAAACAG
301TATCTTTCAG AATAAACAGC GAAGACTTCT TGCTGGAAGC GCAAGTGAGG GATCAGCCAC
361GCTGGCTCCT GGTCTGCCAT GAGGGCTGGA GCCCCGCCCT GGGGCTGCAG ATCTGCTGGA
421GCCTTGGGCA TCTCAGACTC ACTCACCACA AGGGAGTAAA CCTCACTGAC ATCAAACTCA
481ACAGTTCCCA GGAGTTTGCT CAGCTCTCTC CTAGACTGGG AGGCTTCCTG GAGGAGGCGT
541GGCAGCCCAG GAACAACTGC ACTTCTGGTC AAGTTGTTTC CCTCAGATGC TCTGAGTGTG
601GAGCGAGGCC CCTGGCTTCC CGGATAGTTG GTGGGCAGTC TGTGGCTCCT GGGCGCTGGC
661CGTGGCAGGC CAGCGTGGCC CTGGGCTTCC GGCACACGTG TGGGGGCTCT GTGCTAGCGC
721CACGCTGGGT GGTGACTGCT GCACATTGTA TGCACAGTTT CAGGCTGGCC CGCCTGTCCA
781GCTGGCGGGT TCATGCGGGG CTGGTCAGCC ACAGTGCCGT CAGGCCCCAC CAAGGGGCTC
841TGGTGGAGAG GATTATCCCA CACCCCCTCT ACAGTGCCCA GAATCATGAC TACGACGTCG
901CCCTCCTGAG GCTCCAGACC GCTCTCAACT TCTCAGACAC TGTGGGCGCT GTGTGCCTGC
961CGGCCAAGGA ACAGCATTTT CCGAAGGGCT CGCGGTGCTG GGTGTCTGGC TGGGGCCACA
1021CCCACCCTAG CCATACTTAC AGCTCGGATA TGCTCCAGGA CACGGTGGTG CCCCTGCTCA
1081GCACTCAGCT CTGCAACAGC TCTTGCGTGT ACAGCGGAGC CCTCACCCCC CGCATGCTTT
1141GCGCTGGCTA CCTGGACGGA AGGGCTGATG CATGCCAGGG AGATAGCGGG GGCCCCCTAG
1201TGTGCCCAGA TGGGGACACA TGGCGCCTAG TGGGGGTGGT CAGCTGGGGG CGTGGCTGCG
1261CAGAGCCCAA TCACCCAGGT GTCTACGCCA AGGTAGCTGA GTTTCTGGAC TGGATCCATG
1321ACACTGCTCA GGACTCCCTC CTCTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1381agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)