Construct: ORF ccsbBroadEn_14562
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018844.1_s300c1, BRDN0000458140
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CAMK2A (815)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 815 | CAMK2A | calcium/calmodulin dependen... | NM_001363990.1 | 99.7% | 47.9% | (many diffs) |
| 2 | human | 815 | CAMK2A | calcium/calmodulin dependen... | NM_171825.2 | 99.7% | 47.9% | (many diffs) |
| 3 | human | 815 | CAMK2A | calcium/calmodulin dependen... | NM_001369025.2 | 99.6% | 47.9% | (many diffs) |
| 4 | human | 815 | CAMK2A | calcium/calmodulin dependen... | NM_001363989.1 | 97.4% | 46.8% | (many diffs) |
| 5 | human | 815 | CAMK2A | calcium/calmodulin dependen... | NM_015981.4 | 97.4% | 46.8% | (many diffs) |
| 6 | human | 816 | CAMK2B | calcium/calmodulin dependen... | NM_172083.3 | 79.9% | 43.4% | (many diffs) |
| 7 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_005249864.3 | 77.6% | 42.1% | (many diffs) |
| 8 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012665.1 | 77.5% | 42.1% | (many diffs) |
| 9 | human | 816 | CAMK2B | calcium/calmodulin dependen... | NM_172081.3 | 76.1% | 41.3% | (many diffs) |
| 10 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012664.1 | 76% | 41.4% | (many diffs) |
| 11 | human | 816 | CAMK2B | calcium/calmodulin dependen... | NM_172084.3 | 75.3% | 46.3% | (many diffs) |
| 12 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_006715784.2 | 74.2% | 40.1% | (many diffs) |
| 13 | human | 816 | CAMK2B | calcium/calmodulin dependen... | NM_172079.2 | 74.1% | 40.1% | (many diffs) |
| 14 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_006714330.3 | 74% | 44.9% | (many diffs) |
| 15 | human | 816 | CAMK2B | calcium/calmodulin dependen... | NM_172080.3 | 74% | 40.2% | (many diffs) |
| 16 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_172128.3 | 73.4% | 43.9% | (many diffs) |
| 17 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321576.2 | 73.3% | 44% | (many diffs) |
| 18 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_017008678.2 | 73.1% | 44% | (many diffs) |
| 19 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_005249862.3 | 72.9% | 39.4% | (many diffs) |
| 20 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321582.2 | 72.4% | 42.9% | (many diffs) |
| 21 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321575.2 | 72.4% | 43.6% | (many diffs) |
| 22 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321577.2 | 72.3% | 43.7% | (many diffs) |
| 23 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_011532291.2 | 72.2% | 42.9% | (many diffs) |
| 24 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321583.2 | 72.2% | 43.6% | (many diffs) |
| 25 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_017008677.2 | 72.1% | 43.7% | (many diffs) |
| 26 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321590.2 | 71.6% | 42.6% | (many diffs) |
| 27 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321584.2 | 71.5% | 42.7% | (many diffs) |
| 28 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321568.2 | 71.5% | 42.7% | (many diffs) |
| 29 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321589.2 | 71.3% | 42.6% | (many diffs) |
| 30 | human | 816 | CAMK2B | calcium/calmodulin dependen... | NM_001293170.2 | 71% | 38.3% | (many diffs) |
| 31 | human | 816 | CAMK2B | calcium/calmodulin dependen... | NM_172078.3 | 71% | 38.3% | (many diffs) |
| 32 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321587.2 | 70.6% | 41.7% | (many diffs) |
| 33 | human | 816 | CAMK2B | calcium/calmodulin dependen... | NM_172082.3 | 70.5% | 42.2% | (many diffs) |
| 34 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001221.4 | 70.4% | 42% | (many diffs) |
| 35 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321591.2 | 70.4% | 41.7% | (many diffs) |
| 36 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321574.2 | 70.4% | 42.1% | (many diffs) |
| 37 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_011532295.2 | 70.4% | 42.1% | (many diffs) |
| 38 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321572.2 | 70.1% | 41.9% | (many diffs) |
| 39 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_017008674.2 | 70.1% | 42% | (many diffs) |
| 40 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321567.2 | 69.9% | 41.9% | (many diffs) |
| 41 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_011532289.2 | 69.5% | 41.1% | (many diffs) |
| 42 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_017008672.2 | 69.5% | 41.9% | (many diffs) |
| 43 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_011532290.2 | 69.5% | 41.2% | (many diffs) |
| 44 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_017008673.2 | 69.5% | 41.9% | (many diffs) |
| 45 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321570.2 | 69.3% | 41% | (many diffs) |
| 46 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321586.2 | 69.2% | 41% | (many diffs) |
| 47 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321579.2 | 69.1% | 41% | (many diffs) |
| 48 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321566.2 | 68.7% | 40.9% | (many diffs) |
| 49 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321588.2 | 68.7% | 41% | (many diffs) |
| 50 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321580.2 | 68.4% | 40.4% | (many diffs) |
| 51 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321573.2 | 67.9% | 40% | (many diffs) |
| 52 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321571.2 | 67.4% | 40.3% | (many diffs) |
| 53 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_005263254.4 | 67.4% | 40.4% | (many diffs) |
| 54 | human | 817 | CAMK2D | calcium/calmodulin dependen... | NM_001321569.2 | 66.7% | 39.3% | (many diffs) |
| 55 | human | 817 | CAMK2D | calcium/calmodulin dependen... | XM_005263253.4 | 66.6% | 39.4% | (many diffs) |
| 56 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012662.1 | 63.7% | 34.4% | (many diffs) |
| 57 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_024446945.1 | 61.5% | 33.1% | (many diffs) |
| 58 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_006715781.2 | 61.2% | 33.2% | (many diffs) |
| 59 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012661.1 | 58.7% | 31.7% | (many diffs) |
| 60 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515556.1 | 58.2% | 31.4% | (many diffs) |
| 61 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515557.1 | 58.2% | 31.5% | (many diffs) |
| 62 | human | 816 | CAMK2B | calcium/calmodulin dependen... | NM_001220.5 | 58% | 31.2% | (many diffs) |
| 63 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515555.1 | 58% | 31.2% | (many diffs) |
| 64 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515553.1 | 57.6% | 30.9% | (many diffs) |
| 65 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012660.1 | 57.4% | 31% | (many diffs) |
| 66 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515554.1 | 57.3% | 31% | (many diffs) |
| 67 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515551.1 | 56.4% | 30.3% | (many diffs) |
| 68 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515550.1 | 56.3% | 30.3% | (many diffs) |
| 69 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515552.1 | 56.2% | 30.4% | (many diffs) |
| 70 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515549.1 | 55.5% | 29.9% | (many diffs) |
| 71 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012670.2 | 54.7% | 18.7% | (many diffs) |
| 72 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515547.1 | 54.5% | 29.3% | (many diffs) |
| 73 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012669.2 | 53.5% | 18.1% | (many diffs) |
| 74 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012668.2 | 53.3% | 18.1% | (many diffs) |
| 75 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_024446946.1 | 53.2% | 18.2% | (many diffs) |
| 76 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012667.2 | 52.4% | 17.8% | (many diffs) |
| 77 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012666.2 | 51.2% | 17.3% | (many diffs) |
| 78 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_017012663.2 | 40.6% | 13.7% | (many diffs) |
| 79 | human | 816 | CAMK2B | calcium/calmodulin dependen... | XM_011515559.2 | 39.3% | 13.2% | (many diffs) |
| 80 | mouse | 12322 | Camk2a | calcium/calmodulin-dependen... | NM_177407.4 | 92.8% | 47.9% | (many diffs) |
| 81 | mouse | 12322 | Camk2a | calcium/calmodulin-dependen... | XM_017317805.2 | 92.8% | 47.9% | (many diffs) |
| 82 | mouse | 12322 | Camk2a | calcium/calmodulin-dependen... | XM_006525541.4 | 90.8% | 46.8% | (many diffs) |
| 83 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_006514479.2 | 76.2% | 41.3% | (many diffs) |
| 84 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_006514476.1 | 74% | 40.1% | (many diffs) |
| 85 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_006514477.1 | 74% | 40.2% | (many diffs) |
| 86 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_006514475.1 | 73% | 39.4% | (many diffs) |
| 87 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_017314240.1 | 72.9% | 39.3% | (many diffs) |
| 88 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | NM_001174054.1 | 72.5% | 39.3% | (many diffs) |
| 89 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | NM_007595.5 | 71% | 38.3% | (many diffs) |
| 90 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_017314239.1 | 70.9% | 38.3% | (many diffs) |
| 91 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | NM_001174053.1 | 70.3% | 38.1% | (many diffs) |
| 92 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_006514469.2 | 61.4% | 33.1% | (many diffs) |
| 93 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_006514470.3 | 61.3% | 33.2% | (many diffs) |
| 94 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_006514467.2 | 60% | 32.3% | (many diffs) |
| 95 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_017314238.1 | 59.9% | 32.4% | (many diffs) |
| 96 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_017314237.1 | 59.2% | 31.9% | (many diffs) |
| 97 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_006514465.2 | 58% | 31.2% | (many diffs) |
| 98 | mouse | 12323 | Camk2b | calcium/calmodulin-dependen... | XM_006514464.2 | 57.9% | 31.1% | (many diffs) |
| 99 | mouse | 12322 | Camk2a | calcium/calmodulin-dependen... | NM_001286809.1 | 35.8% | 14.3% | (many diffs) |
| 100 | mouse | 12322 | Camk2a | calcium/calmodulin-dependen... | NM_009792.3 | 35% | 12.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 87
- ORF end:
- 777
- ORF length:
- 690
- Sequence:
-
1 TGGACTGGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT TTTATAATGC 61 CAACTTTGTA CAAAAAAGTT GGCACCATGG CCACCATCAC CTGCACCCGC TTCACGGAAG 121 AGTACCAGCT CTTCGAGGAA TTGGGCAAGG GAGCCTTCTC GGTGGTGCGA AGGTGTGTGA 181 AGGTGCTGGC TGGCCAGGAG TATGCTGCCA AGATCATCAA CACAAAGAAG CTGTCAGCCA 241 GAGACCATCA GAAGCTGGAG CGTGAAGCCC GCATCTGCCG CCTGCTGAAG CACCCCAACA 301 TCGTCCGACT ACATGACAGC ATCTCAGAGG AGGGACACCA CTACCTGATC TTCGACCTGG 361 TCACTGGTGG GGAACTGTTT GAAGATATCG TGGCCCGGGA GTATTACAGT GAGGCGGATG 421 CCAGTCACTG TATCCAGCAG ATCCTGGAGG CTGTGCTGCA CTGCCACCAG ATGGGGGTGG 481 TGCACCGGGA CCTGAAGCCT GAGAATCTGT TGCTGGCCTC CAAGCTCAAG GGTGCCGCAG 541 TGAAGCTGGC AGACTTTGGC CTGGCCATAG AGGTGGAGGG GGAGCAGCAG GCATGGTTTG 601 GGTTTGCAGG GACTCCTGGA TATCTCTCCC CAGAAGTGCT GCGGAAGGAC CCGTACGGGA 661 AGCCTGTGGA CCTGTGGGCT TGTGGGGTCA TCCTGTACAT CCTGCTGGTT GGGTACCCCC 721 CGTTCTGGGA TGAGGACCAG CACCGCCTGT ACCAGCAGAT CAAAGCCGGC GCCTTATGAT 781 TTCCCATCGC CGGAATGGGA CACTGTCACC CCGGAAGCCA AGGATCTGAT CAATAAGATG 841 CTGACCATTA ACCCATCCAA ACGCATCACA GCTGCCGAAG CCATTAAGCA CCCCTGGATC 901 TCGCACCGCT CCACCGTGGC ATCGTGCATG CACAGACAGG AGACCGTGGA CTGCCTGAAG 961 AAGTTCAATG CCAGGAGGAA ACTGAAGGGA GCCATTCTCA CCACGATGCT GGCCACCAGG 1021 AACTTCTCCG GAGGGAAGAG TGGGGGAAAC AAGAAGAGCG ATGGTGTGAA GGAATCCTCA 1081 GAGAGCACCA ACACCACCAT CGAGGATGAA GACACCAAAG TGCGGAAACA GGAAATTATA 1141 AAAGTGACAG AGCAGCTGAT TGAAGCCATA AGCAATGGAG ATTTTGAGTC CTACACGAAG 1201 ATGTGCGACC CTGGCATGAC AGCCTTCGAA CCTGAGGCCC TGGGGAACCT GGTTGAGGGC 1261 CTGGACTTCC ATCGATTCTA TTTTGAAAAC CTGTGGTCCC GGAACAGCAA GCCCGTGCAC 1321 ACCACCATCC TGAATCCCCA CATCCACCTG ATGGGCGACG AGTCAGCCTG CATCGCCTAC 1381 ATCCGCATCA CGCAGTACCT GGACGCTGGC GGCATCCCAC GCACCGCCCA GTCGGAGGAG 1441 ACCCGTGTCT GGCACCGCCG GGACGGCAAA TGGCAGATCG TCCACTTCCA CAGATCTGGG 1501 GCGCCCTCCG TCCTGCCCCA CTTGCCAACT TTCTTGTACA AAGTTGGCAT TATAAGAAAG 1561 CATTGCTTAT CAATTTGTTG CAACGAACAG GTCACTATCA GTCAAAATAA AATCATTATT 1621 GCCATCCAGC TGATCGAG