Construct: ORF ccsbBroadEn_15888
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014168.1_s300c1, BRDN0000396461
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PBRM1 (55193)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55193 | PBRM1 | polybromo 1 | XM_017006759.2 | 18.7% | 18.7% | 1_3972del |
| 2 | human | 55193 | PBRM1 | polybromo 1 | NM_001350075.2 | 18.7% | 18.7% | 1_3984del |
| 3 | human | 55193 | PBRM1 | polybromo 1 | XM_017006758.1 | 18.7% | 18.7% | 1_3984del |
| 4 | human | 55193 | PBRM1 | polybromo 1 | NM_018313.5 | 18.6% | 17.3% | (many diffs) |
| 5 | human | 55193 | PBRM1 | polybromo 1 | XM_017006756.2 | 18.5% | 18.5% | 1_4044del |
| 6 | human | 55193 | PBRM1 | polybromo 1 | XM_017006755.2 | 18.4% | 18.4% | 1_4047del |
| 7 | human | 55193 | PBRM1 | polybromo 1 | XM_017006753.2 | 18.2% | 18.2% | 1_4119del |
| 8 | human | 55193 | PBRM1 | polybromo 1 | XM_017006751.2 | 18.1% | 18.1% | 1_3972del;4275_4439del |
| 9 | human | 55193 | PBRM1 | polybromo 1 | XM_017006748.1 | 18.1% | 18.1% | 1_3984del;4287_4451del |
| 10 | human | 55193 | PBRM1 | polybromo 1 | XM_017006749.1 | 18.1% | 18.1% | 1_3984del;4287_4451del |
| 11 | human | 55193 | PBRM1 | polybromo 1 | XM_017006750.1 | 18.1% | 18.1% | 1_3984del;4287_4451del |
| 12 | human | 55193 | PBRM1 | polybromo 1 | XM_017006747.1 | 17.9% | 17.9% | 1_4023del;4326_4490del |
| 13 | human | 55193 | PBRM1 | polybromo 1 | XM_005265279.5 | 17.9% | 17.9% | 1_4029del;4332_4496del |
| 14 | human | 55193 | PBRM1 | polybromo 1 | XM_005265280.3 | 17.9% | 17.9% | 1_4029del;4332_4496del |
| 15 | human | 55193 | PBRM1 | polybromo 1 | XM_005265282.4 | 17.9% | 17.9% | 1_4029del;4332_4496del |
| 16 | human | 55193 | PBRM1 | polybromo 1 | XM_017006745.2 | 17.9% | 17.9% | 1_4029del;4332_4496del |
| 17 | human | 55193 | PBRM1 | polybromo 1 | XM_017006746.2 | 17.9% | 17.9% | 1_4029del;4332_4496del |
| 18 | human | 55193 | PBRM1 | polybromo 1 | XM_017006744.1 | 17.9% | 17.9% | 1_4038del;4341_4505del |
| 19 | human | 55193 | PBRM1 | polybromo 1 | XM_017006743.2 | 17.9% | 17.9% | 1_4044del;4347_4511del |
| 20 | human | 55193 | PBRM1 | polybromo 1 | XM_017006741.2 | 17.8% | 17.8% | 1_4047del;4350_4514del |
| 21 | human | 55193 | PBRM1 | polybromo 1 | XM_017006742.1 | 17.8% | 17.8% | 1_4047del;4350_4514del |
| 22 | human | 55193 | PBRM1 | polybromo 1 | XM_017006737.1 | 17.8% | 17.8% | 1_4056del;4359_4523del |
| 23 | human | 55193 | PBRM1 | polybromo 1 | XM_017006738.2 | 17.8% | 17.8% | 1_4056del;4359_4523del |
| 24 | human | 55193 | PBRM1 | polybromo 1 | XM_017006739.1 | 17.8% | 17.8% | 1_4056del;4359_4523del |
| 25 | human | 55193 | PBRM1 | polybromo 1 | XM_017006740.1 | 17.8% | 17.8% | 1_4056del;4359_4523del |
| 26 | human | 55193 | PBRM1 | polybromo 1 | XM_017006736.1 | 17.8% | 17.8% | 1_4071del;4374_4538del |
| 27 | human | 55193 | PBRM1 | polybromo 1 | XM_017006735.2 | 17.8% | 17.8% | 1_4074del;4377_4541del |
| 28 | human | 55193 | PBRM1 | polybromo 1 | XM_017006733.2 | 17.7% | 17.7% | 1_4080del;4383_4547del |
| 29 | human | 55193 | PBRM1 | polybromo 1 | XM_017006734.2 | 17.7% | 17.7% | 1_4080del;4383_4547del |
| 30 | human | 55193 | PBRM1 | polybromo 1 | XM_024453618.1 | 17.7% | 17.7% | 1_4083del;4386_4550del |
| 31 | human | 55193 | PBRM1 | polybromo 1 | XM_024453619.1 | 17.7% | 17.7% | 1_4083del;4386_4550del |
| 32 | human | 55193 | PBRM1 | polybromo 1 | XM_017006732.1 | 17.7% | 17.7% | 1_4089del;4392_4556del |
| 33 | human | 55193 | PBRM1 | polybromo 1 | XM_011533900.3 | 17.7% | 17.7% | 1_4092del;4395_4559del |
| 34 | human | 55193 | PBRM1 | polybromo 1 | XM_011533902.3 | 17.7% | 17.7% | 1_4092del;4395_4559del |
| 35 | human | 55193 | PBRM1 | polybromo 1 | XM_011533903.3 | 17.7% | 17.7% | 1_4092del;4395_4559del |
| 36 | human | 55193 | PBRM1 | polybromo 1 | XM_017006730.1 | 17.6% | 17.6% | 1_4110del;4413_4577del |
| 37 | human | 55193 | PBRM1 | polybromo 1 | XM_017006731.1 | 17.6% | 17.6% | 1_4110del;4413_4577del |
| 38 | human | 55193 | PBRM1 | polybromo 1 | XM_017006729.2 | 17.6% | 17.6% | 1_4116del;4419_4583del |
| 39 | human | 55193 | PBRM1 | polybromo 1 | XM_017006725.1 | 17.6% | 17.6% | 1_4119del;4422_4586del |
| 40 | human | 55193 | PBRM1 | polybromo 1 | XM_017006726.1 | 17.6% | 17.6% | 1_4119del;4422_4586del |
| 41 | human | 55193 | PBRM1 | polybromo 1 | XM_017006727.1 | 17.6% | 17.6% | 1_4119del;4422_4586del |
| 42 | human | 55193 | PBRM1 | polybromo 1 | XM_017006728.1 | 17.6% | 17.6% | 1_4119del;4422_4586del |
| 43 | human | 55193 | PBRM1 | polybromo 1 | NM_001366071.2 | 16.8% | 15.9% | (many diffs) |
| 44 | human | 55193 | PBRM1 | polybromo 1 | XM_017006754.1 | 16.7% | 15.8% | (many diffs) |
| 45 | human | 55193 | PBRM1 | polybromo 1 | XM_017006752.1 | 16.6% | 15.7% | (many diffs) |
| 46 | human | 55193 | PBRM1 | polybromo 1 | NM_001350079.2 | 15.5% | 15.5% | 1_3972del;4275_4276ins156 |
| 47 | human | 55193 | PBRM1 | polybromo 1 | NM_181042.5 | 15.5% | 15.5% | 1_3984del;4287_4288ins156 |
| 48 | human | 55193 | PBRM1 | polybromo 1 | NM_001366076.2 | 15.5% | 15.5% | 1_3987del;4290_4291ins156 |
| 49 | human | 55193 | PBRM1 | polybromo 1 | NM_001366075.2 | 15.4% | 15.4% | 1_4017del;4320_4321ins156 |
| 50 | human | 55193 | PBRM1 | polybromo 1 | NM_001366074.2 | 15.3% | 15.3% | 1_4035del;4338_4339ins156 |
| 51 | human | 55193 | PBRM1 | polybromo 1 | NM_001366073.2 | 15.3% | 15.3% | 1_4038del;4341_4342ins156 |
| 52 | human | 55193 | PBRM1 | polybromo 1 | NM_001366072.2 | 15.3% | 15.3% | 1_4047del;4350_4351ins156 |
| 53 | human | 55193 | PBRM1 | polybromo 1 | XM_017006764.2 | 15.3% | 15.3% | 1_4047del;4350_4351ins156 |
| 54 | human | 55193 | PBRM1 | polybromo 1 | NM_001350077.2 | 15.2% | 15.2% | 1_4083del;4386_4387ins156 |
| 55 | human | 55193 | PBRM1 | polybromo 1 | NM_001350076.2 | 15.2% | 15.2% | 1_4089del;4392_4393ins156 |
| 56 | human | 55193 | PBRM1 | polybromo 1 | NM_001350074.2 | 15.2% | 15.2% | 1_4092del;4395_4396ins156 |
| 57 | human | 55193 | PBRM1 | polybromo 1 | NM_001350078.2 | 15.2% | 15.2% | 1_4092del;4395_4396ins156 |
| 58 | human | 55193 | PBRM1 | polybromo 1 | NM_001366070.2 | 15.2% | 15.2% | 1_4092del;4395_4396ins156 |
| 59 | human | 55193 | PBRM1 | polybromo 1 | XR_001740194.2 | 10.4% | (many diffs) | |
| 60 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519424.3 | 17.5% | 18.6% | (many diffs) |
| 61 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519423.3 | 17.2% | 18.3% | (many diffs) |
| 62 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316157.1 | 17.1% | 18.2% | (many diffs) |
| 63 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316158.1 | 17.1% | 18.2% | (many diffs) |
| 64 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519422.3 | 17% | 18.1% | (many diffs) |
| 65 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519420.3 | 16.9% | 18% | (many diffs) |
| 66 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519419.2 | 16.9% | 18% | (many diffs) |
| 67 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316155.1 | 16.9% | 18% | (many diffs) |
| 68 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316154.1 | 16.9% | 18% | (many diffs) |
| 69 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519417.1 | 16.9% | 18% | (many diffs) |
| 70 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316153.1 | 16.8% | 17.9% | (many diffs) |
| 71 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519416.1 | 16.8% | 17.8% | (many diffs) |
| 72 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316152.1 | 16.8% | 17.8% | (many diffs) |
| 73 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316150.1 | 16.7% | 17.8% | (many diffs) |
| 74 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316151.1 | 16.7% | 17.8% | (many diffs) |
| 75 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316148.1 | 16.7% | 17.8% | (many diffs) |
| 76 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316149.1 | 16.7% | 17.8% | (many diffs) |
| 77 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519415.3 | 16.7% | 17.8% | (many diffs) |
| 78 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316147.1 | 16.7% | 17.8% | (many diffs) |
| 79 | mouse | 66923 | Pbrm1 | polybromo 1 | NM_001081251.1 | 16.7% | 17.7% | (many diffs) |
| 80 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519412.3 | 16.6% | 17.7% | (many diffs) |
| 81 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519413.3 | 16.6% | 17.7% | (many diffs) |
| 82 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519414.3 | 16.6% | 17.7% | (many diffs) |
| 83 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316146.1 | 16.6% | 17.7% | (many diffs) |
| 84 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519411.3 | 16.6% | 17.7% | (many diffs) |
| 85 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316145.1 | 16.6% | 17.6% | (many diffs) |
| 86 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519410.3 | 16.5% | 17.6% | (many diffs) |
| 87 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316143.1 | 16.5% | 17.6% | (many diffs) |
| 88 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316144.1 | 16.5% | 17.6% | (many diffs) |
| 89 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519409.3 | 16.5% | 17.5% | (many diffs) |
| 90 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519408.3 | 16.4% | 17.5% | (many diffs) |
| 91 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316142.1 | 16.4% | 17.5% | (many diffs) |
| 92 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519407.3 | 16.4% | 17.5% | (many diffs) |
| 93 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316140.1 | 16.4% | 17.5% | (many diffs) |
| 94 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316141.1 | 16.4% | 17.5% | (many diffs) |
| 95 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519406.3 | 16.4% | 17.5% | (many diffs) |
| 96 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316139.1 | 16.4% | 17.5% | (many diffs) |
| 97 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519402.3 | 16.4% | 17.5% | (many diffs) |
| 98 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519403.1 | 16.4% | 17.5% | (many diffs) |
| 99 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519405.3 | 16.4% | 17.5% | (many diffs) |
| 100 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316137.1 | 16.4% | 17.5% | (many diffs) |
| 101 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316138.1 | 16.4% | 17.5% | (many diffs) |
| 102 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316159.1 | 15.8% | 16% | (many diffs) |
| 103 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316156.1 | 15.5% | 15.7% | (many diffs) |
| 104 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519421.3 | 15.4% | 15.6% | (many diffs) |
| 105 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519418.3 | 15.4% | 15.6% | (many diffs) |
| 106 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_017316160.1 | 14.2% | 15.3% | (many diffs) |
| 107 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519427.3 | 14% | 15.1% | (many diffs) |
| 108 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519426.3 | 13.9% | 15% | (many diffs) |
| 109 | mouse | 66923 | Pbrm1 | polybromo 1 | XM_006519425.3 | 13.9% | 14.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 984
- ORF length:
- 918
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatggg agaagaagat agtgaggtca ttgaacctcc ttctctacct cagcttcaga 121 cccccctggc cagtgagctg gacctcatgc cctacacacc cccacagtct accccaaagt 181 ctgccaaagg cagtgcaaag aaggaaggct ccaaacggaa aatcaacatg agtggctaca 241 tcctgttcag cagtgagatg agggctgtga ttaaggccca acacccagac tactctttcg 301 gggagctcag ccgcctggtg gggacagaat ggagaaatct tgagacagcc aagaaagcag 361 aatatgaagg catgatgggt ggctatccgc caggccttcc acctttgcag ggcccagttg 421 atggccttgt tagcatgggc agcatgcagc cacttcaccc tggggggcct ccaccccacc 481 atcttccgcc aggtgtgcct ggcctcccgg gcatcccacc accgggtgtg atgaaccaag 541 gagtggcccc tatggtaggg actccagcac caggtggaag tccatatgga caacaggtgg 601 gagttttggg gcctccaggg cagcaggcac cacctccata tcccggccca catccagctg 661 gaccccctgt catacagcag ccaacaacac ccatgtttgt agctccccca ccaaagaccc 721 agcggcttct tcactcagag gcctacctga aatacattga aggactcagt gcggagtcca 781 acagcattag caagtgggat cagacactgg cagctcgaag acgcgacgtc catttgtcga 841 aagaacagga gagccgccta ccctctcact ggctgaaaag caaaggggcc cacaccacca 901 tggcagatgc cctctggcgc cttcgagatt tgatgctccg ggacaccctc aacattcgcc 961 aagcatacaa cctagaaaat gtttnnccaa ctttcttgta caaagttggc attataagaa 1021 agcattgctt atcaatttgt tgcaacgaac