Construct: ORF ccsbBroadEn_15888

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014168.1_s300c1, BRDN0000396461
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PBRM1 (55193)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55193 PBRM1 polybromo 1 XM_017006759.2 18.7% 18.7% 1_3972del
2 human 55193 PBRM1 polybromo 1 NM_001350075.2 18.7% 18.7% 1_3984del
3 human 55193 PBRM1 polybromo 1 XM_017006758.1 18.7% 18.7% 1_3984del
4 human 55193 PBRM1 polybromo 1 NM_018313.5 18.6% 17.3% (many diffs)
5 human 55193 PBRM1 polybromo 1 XM_017006756.2 18.5% 18.5% 1_4044del
6 human 55193 PBRM1 polybromo 1 XM_017006755.2 18.4% 18.4% 1_4047del
7 human 55193 PBRM1 polybromo 1 XM_017006753.2 18.2% 18.2% 1_4119del
8 human 55193 PBRM1 polybromo 1 XM_017006751.2 18.1% 18.1% 1_3972del;4275_4439del
9 human 55193 PBRM1 polybromo 1 XM_017006748.1 18.1% 18.1% 1_3984del;4287_4451del
10 human 55193 PBRM1 polybromo 1 XM_017006749.1 18.1% 18.1% 1_3984del;4287_4451del
11 human 55193 PBRM1 polybromo 1 XM_017006750.1 18.1% 18.1% 1_3984del;4287_4451del
12 human 55193 PBRM1 polybromo 1 XM_017006747.1 17.9% 17.9% 1_4023del;4326_4490del
13 human 55193 PBRM1 polybromo 1 XM_005265279.5 17.9% 17.9% 1_4029del;4332_4496del
14 human 55193 PBRM1 polybromo 1 XM_005265280.3 17.9% 17.9% 1_4029del;4332_4496del
15 human 55193 PBRM1 polybromo 1 XM_005265282.4 17.9% 17.9% 1_4029del;4332_4496del
16 human 55193 PBRM1 polybromo 1 XM_017006745.2 17.9% 17.9% 1_4029del;4332_4496del
17 human 55193 PBRM1 polybromo 1 XM_017006746.2 17.9% 17.9% 1_4029del;4332_4496del
18 human 55193 PBRM1 polybromo 1 XM_017006744.1 17.9% 17.9% 1_4038del;4341_4505del
19 human 55193 PBRM1 polybromo 1 XM_017006743.2 17.9% 17.9% 1_4044del;4347_4511del
20 human 55193 PBRM1 polybromo 1 XM_017006741.2 17.8% 17.8% 1_4047del;4350_4514del
21 human 55193 PBRM1 polybromo 1 XM_017006742.1 17.8% 17.8% 1_4047del;4350_4514del
22 human 55193 PBRM1 polybromo 1 XM_017006737.1 17.8% 17.8% 1_4056del;4359_4523del
23 human 55193 PBRM1 polybromo 1 XM_017006738.2 17.8% 17.8% 1_4056del;4359_4523del
24 human 55193 PBRM1 polybromo 1 XM_017006739.1 17.8% 17.8% 1_4056del;4359_4523del
25 human 55193 PBRM1 polybromo 1 XM_017006740.1 17.8% 17.8% 1_4056del;4359_4523del
26 human 55193 PBRM1 polybromo 1 XM_017006736.1 17.8% 17.8% 1_4071del;4374_4538del
27 human 55193 PBRM1 polybromo 1 XM_017006735.2 17.8% 17.8% 1_4074del;4377_4541del
28 human 55193 PBRM1 polybromo 1 XM_017006733.2 17.7% 17.7% 1_4080del;4383_4547del
29 human 55193 PBRM1 polybromo 1 XM_017006734.2 17.7% 17.7% 1_4080del;4383_4547del
30 human 55193 PBRM1 polybromo 1 XM_024453618.1 17.7% 17.7% 1_4083del;4386_4550del
31 human 55193 PBRM1 polybromo 1 XM_024453619.1 17.7% 17.7% 1_4083del;4386_4550del
32 human 55193 PBRM1 polybromo 1 XM_017006732.1 17.7% 17.7% 1_4089del;4392_4556del
33 human 55193 PBRM1 polybromo 1 XM_011533900.3 17.7% 17.7% 1_4092del;4395_4559del
34 human 55193 PBRM1 polybromo 1 XM_011533902.3 17.7% 17.7% 1_4092del;4395_4559del
35 human 55193 PBRM1 polybromo 1 XM_011533903.3 17.7% 17.7% 1_4092del;4395_4559del
36 human 55193 PBRM1 polybromo 1 XM_017006730.1 17.6% 17.6% 1_4110del;4413_4577del
37 human 55193 PBRM1 polybromo 1 XM_017006731.1 17.6% 17.6% 1_4110del;4413_4577del
38 human 55193 PBRM1 polybromo 1 XM_017006729.2 17.6% 17.6% 1_4116del;4419_4583del
39 human 55193 PBRM1 polybromo 1 XM_017006725.1 17.6% 17.6% 1_4119del;4422_4586del
40 human 55193 PBRM1 polybromo 1 XM_017006726.1 17.6% 17.6% 1_4119del;4422_4586del
41 human 55193 PBRM1 polybromo 1 XM_017006727.1 17.6% 17.6% 1_4119del;4422_4586del
42 human 55193 PBRM1 polybromo 1 XM_017006728.1 17.6% 17.6% 1_4119del;4422_4586del
43 human 55193 PBRM1 polybromo 1 NM_001366071.2 16.8% 15.9% (many diffs)
44 human 55193 PBRM1 polybromo 1 XM_017006754.1 16.7% 15.8% (many diffs)
45 human 55193 PBRM1 polybromo 1 XM_017006752.1 16.6% 15.7% (many diffs)
46 human 55193 PBRM1 polybromo 1 NM_001350079.2 15.5% 15.5% 1_3972del;4275_4276ins156
47 human 55193 PBRM1 polybromo 1 NM_181042.5 15.5% 15.5% 1_3984del;4287_4288ins156
48 human 55193 PBRM1 polybromo 1 NM_001366076.2 15.5% 15.5% 1_3987del;4290_4291ins156
49 human 55193 PBRM1 polybromo 1 NM_001366075.2 15.4% 15.4% 1_4017del;4320_4321ins156
50 human 55193 PBRM1 polybromo 1 NM_001366074.2 15.3% 15.3% 1_4035del;4338_4339ins156
51 human 55193 PBRM1 polybromo 1 NM_001366073.2 15.3% 15.3% 1_4038del;4341_4342ins156
52 human 55193 PBRM1 polybromo 1 NM_001366072.2 15.3% 15.3% 1_4047del;4350_4351ins156
53 human 55193 PBRM1 polybromo 1 XM_017006764.2 15.3% 15.3% 1_4047del;4350_4351ins156
54 human 55193 PBRM1 polybromo 1 NM_001350077.2 15.2% 15.2% 1_4083del;4386_4387ins156
55 human 55193 PBRM1 polybromo 1 NM_001350076.2 15.2% 15.2% 1_4089del;4392_4393ins156
56 human 55193 PBRM1 polybromo 1 NM_001350074.2 15.2% 15.2% 1_4092del;4395_4396ins156
57 human 55193 PBRM1 polybromo 1 NM_001350078.2 15.2% 15.2% 1_4092del;4395_4396ins156
58 human 55193 PBRM1 polybromo 1 NM_001366070.2 15.2% 15.2% 1_4092del;4395_4396ins156
59 human 55193 PBRM1 polybromo 1 XR_001740194.2 10.4% (many diffs)
60 mouse 66923 Pbrm1 polybromo 1 XM_006519424.3 17.5% 18.6% (many diffs)
61 mouse 66923 Pbrm1 polybromo 1 XM_006519423.3 17.2% 18.3% (many diffs)
62 mouse 66923 Pbrm1 polybromo 1 XM_017316157.1 17.1% 18.2% (many diffs)
63 mouse 66923 Pbrm1 polybromo 1 XM_017316158.1 17.1% 18.2% (many diffs)
64 mouse 66923 Pbrm1 polybromo 1 XM_006519422.3 17% 18.1% (many diffs)
65 mouse 66923 Pbrm1 polybromo 1 XM_006519420.3 16.9% 18% (many diffs)
66 mouse 66923 Pbrm1 polybromo 1 XM_006519419.2 16.9% 18% (many diffs)
67 mouse 66923 Pbrm1 polybromo 1 XM_017316155.1 16.9% 18% (many diffs)
68 mouse 66923 Pbrm1 polybromo 1 XM_017316154.1 16.9% 18% (many diffs)
69 mouse 66923 Pbrm1 polybromo 1 XM_006519417.1 16.9% 18% (many diffs)
70 mouse 66923 Pbrm1 polybromo 1 XM_017316153.1 16.8% 17.9% (many diffs)
71 mouse 66923 Pbrm1 polybromo 1 XM_006519416.1 16.8% 17.8% (many diffs)
72 mouse 66923 Pbrm1 polybromo 1 XM_017316152.1 16.8% 17.8% (many diffs)
73 mouse 66923 Pbrm1 polybromo 1 XM_017316150.1 16.7% 17.8% (many diffs)
74 mouse 66923 Pbrm1 polybromo 1 XM_017316151.1 16.7% 17.8% (many diffs)
75 mouse 66923 Pbrm1 polybromo 1 XM_017316148.1 16.7% 17.8% (many diffs)
76 mouse 66923 Pbrm1 polybromo 1 XM_017316149.1 16.7% 17.8% (many diffs)
77 mouse 66923 Pbrm1 polybromo 1 XM_006519415.3 16.7% 17.8% (many diffs)
78 mouse 66923 Pbrm1 polybromo 1 XM_017316147.1 16.7% 17.8% (many diffs)
79 mouse 66923 Pbrm1 polybromo 1 NM_001081251.1 16.7% 17.7% (many diffs)
80 mouse 66923 Pbrm1 polybromo 1 XM_006519412.3 16.6% 17.7% (many diffs)
81 mouse 66923 Pbrm1 polybromo 1 XM_006519413.3 16.6% 17.7% (many diffs)
82 mouse 66923 Pbrm1 polybromo 1 XM_006519414.3 16.6% 17.7% (many diffs)
83 mouse 66923 Pbrm1 polybromo 1 XM_017316146.1 16.6% 17.7% (many diffs)
84 mouse 66923 Pbrm1 polybromo 1 XM_006519411.3 16.6% 17.7% (many diffs)
85 mouse 66923 Pbrm1 polybromo 1 XM_017316145.1 16.6% 17.6% (many diffs)
86 mouse 66923 Pbrm1 polybromo 1 XM_006519410.3 16.5% 17.6% (many diffs)
87 mouse 66923 Pbrm1 polybromo 1 XM_017316143.1 16.5% 17.6% (many diffs)
88 mouse 66923 Pbrm1 polybromo 1 XM_017316144.1 16.5% 17.6% (many diffs)
89 mouse 66923 Pbrm1 polybromo 1 XM_006519409.3 16.5% 17.5% (many diffs)
90 mouse 66923 Pbrm1 polybromo 1 XM_006519408.3 16.4% 17.5% (many diffs)
91 mouse 66923 Pbrm1 polybromo 1 XM_017316142.1 16.4% 17.5% (many diffs)
92 mouse 66923 Pbrm1 polybromo 1 XM_006519407.3 16.4% 17.5% (many diffs)
93 mouse 66923 Pbrm1 polybromo 1 XM_017316140.1 16.4% 17.5% (many diffs)
94 mouse 66923 Pbrm1 polybromo 1 XM_017316141.1 16.4% 17.5% (many diffs)
95 mouse 66923 Pbrm1 polybromo 1 XM_006519406.3 16.4% 17.5% (many diffs)
96 mouse 66923 Pbrm1 polybromo 1 XM_017316139.1 16.4% 17.5% (many diffs)
97 mouse 66923 Pbrm1 polybromo 1 XM_006519402.3 16.4% 17.5% (many diffs)
98 mouse 66923 Pbrm1 polybromo 1 XM_006519403.1 16.4% 17.5% (many diffs)
99 mouse 66923 Pbrm1 polybromo 1 XM_006519405.3 16.4% 17.5% (many diffs)
100 mouse 66923 Pbrm1 polybromo 1 XM_017316137.1 16.4% 17.5% (many diffs)
101 mouse 66923 Pbrm1 polybromo 1 XM_017316138.1 16.4% 17.5% (many diffs)
102 mouse 66923 Pbrm1 polybromo 1 XM_017316159.1 15.8% 16% (many diffs)
103 mouse 66923 Pbrm1 polybromo 1 XM_017316156.1 15.5% 15.7% (many diffs)
104 mouse 66923 Pbrm1 polybromo 1 XM_006519421.3 15.4% 15.6% (many diffs)
105 mouse 66923 Pbrm1 polybromo 1 XM_006519418.3 15.4% 15.6% (many diffs)
106 mouse 66923 Pbrm1 polybromo 1 XM_017316160.1 14.2% 15.3% (many diffs)
107 mouse 66923 Pbrm1 polybromo 1 XM_006519427.3 14% 15.1% (many diffs)
108 mouse 66923 Pbrm1 polybromo 1 XM_006519426.3 13.9% 15% (many diffs)
109 mouse 66923 Pbrm1 polybromo 1 XM_006519425.3 13.9% 14.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
984
ORF length:
918
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatggg agaagaagat agtgaggtca ttgaacctcc ttctctacct cagcttcaga
121cccccctggc cagtgagctg gacctcatgc cctacacacc cccacagtct accccaaagt
181ctgccaaagg cagtgcaaag aaggaaggct ccaaacggaa aatcaacatg agtggctaca
241tcctgttcag cagtgagatg agggctgtga ttaaggccca acacccagac tactctttcg
301gggagctcag ccgcctggtg gggacagaat ggagaaatct tgagacagcc aagaaagcag
361aatatgaagg catgatgggt ggctatccgc caggccttcc acctttgcag ggcccagttg
421atggccttgt tagcatgggc agcatgcagc cacttcaccc tggggggcct ccaccccacc
481atcttccgcc aggtgtgcct ggcctcccgg gcatcccacc accgggtgtg atgaaccaag
541gagtggcccc tatggtaggg actccagcac caggtggaag tccatatgga caacaggtgg
601gagttttggg gcctccaggg cagcaggcac cacctccata tcccggccca catccagctg
661gaccccctgt catacagcag ccaacaacac ccatgtttgt agctccccca ccaaagaccc
721agcggcttct tcactcagag gcctacctga aatacattga aggactcagt gcggagtcca
781acagcattag caagtgggat cagacactgg cagctcgaag acgcgacgtc catttgtcga
841aagaacagga gagccgccta ccctctcact ggctgaaaag caaaggggcc cacaccacca
901tggcagatgc cctctggcgc cttcgagatt tgatgctccg ggacaccctc aacattcgcc
961aagcatacaa cctagaaaat gtttnnccaa ctttcttgta caaagttggc attataagaa
1021agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)