Transcript: Human NR_047689.1

Homo sapiens phosphorylase kinase catalytic subunit gamma 1 (PHKG1), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2018-05-12
Taxon:
Homo sapiens (human)
Gene:
PHKG1 (5260)
Length:
2075
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_047689.1
NBCI Gene record:
PHKG1 (5260)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_047689.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000006205 GCCTACGCTTTCCGAATCTAT pLKO.1 1185 3UTR 100% 5.625 7.875 N PHKG1 n/a
2 TRCN0000197280 GATGATCATGAGCGGCAACTA pLKO.1 860 3UTR 100% 4.950 6.930 N PHKG1 n/a
3 TRCN0000219704 TGCGGATCTACTACCAGTACC pLKO.1 1087 3UTR 100% 4.050 5.670 N PHKG1 n/a
4 TRCN0000199306 CCTGAGATTATCGAGTGCTCC pLKO.1 717 3UTR 100% 2.160 3.024 N PHKG1 n/a
5 TRCN0000382232 AGGACTTCTATGAGAATTATG pLKO_005 236 3UTR 100% 13.200 9.240 N PHKG1 n/a
6 TRCN0000219703 TGATCTGCACCTTGCACAAAC pLKO.1 550 3UTR 100% 10.800 7.560 N PHKG1 n/a
7 TRCN0000380988 TTATCGAGTGCTCCATGAATG pLKO_005 724 3UTR 100% 10.800 7.560 N PHKG1 n/a
8 TRCN0000006202 GCACAGGACTTCTATGAGAAT pLKO.1 232 3UTR 100% 4.950 3.465 N PHKG1 n/a
9 TRCN0000006201 GCCACCATCTCCATTTCTCTT pLKO.1 1589 3UTR 100% 4.950 3.465 N PHKG1 n/a
10 TRCN0000006203 GCTGATGCTGAGGATGATCAT pLKO.1 848 3UTR 100% 4.950 3.465 N PHKG1 n/a
11 TRCN0000006204 CTATGAGAATTATGAGCCCAA pLKO.1 243 3UTR 100% 2.160 1.512 N PHKG1 n/a
12 TRCN0000199952 GCCGTGAAGGTCATCGACGTC pLKO.1 334 3UTR 100% 0.000 0.000 N PHKG1 n/a
13 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 1814 3UTR 100% 4.950 2.475 Y CFLAR n/a
14 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 1814 3UTR 100% 4.950 2.475 Y C19orf31 n/a
15 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 1812 3UTR 100% 4.950 2.475 Y ERN2 n/a
16 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 1812 3UTR 100% 4.950 2.475 Y P3H4 n/a
17 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 1812 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_047689.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000491471 AAACGAACCACGTCGCTTGAGTTC pLX_317 19.4% 51.9% V5 1_195del;457_458ins55;1302_2075delinsG n/a
2 TRCN0000489075 CTGCCCGAGCCCAGCAATAAATTT pLX_317 32.1% 51.9% V5 (not translated due to prior stop codon) 1_195del;457_458ins55;1302_2075del n/a
3 TRCN0000473797 ACCTCCCCATTAAGACGTTATGAT pLX_317 36.8% 51.8% V5 (not translated due to prior stop codon) (many diffs) n/a
4 ccsbBroadEn_14755 pDONR223 100% 51.7% None (many diffs) n/a
5 ccsbBroad304_14755 pLX_304 0% 51.7% V5 (not translated due to prior stop codon) (many diffs) n/a
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