Construct: ORF TRCN0000466056

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000852.1_s317c1
Derived from:
ccsbBroadEn_03356
DNA Barcode:
GATTGTGGGACCCCCCCAGGACAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHMP3 (51652)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466056
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51652 CHMP3 charged multivesicular body... NM_016079.4 100% 100%
2 human 100526767 RNF103-CHMP3 RNF103-CHMP3 readthrough NM_001198954.1 84.4% 83.2% (many diffs)
3 human 51652 CHMP3 charged multivesicular body... NM_001193517.2 81.9% 81.9% 212_213ins120
4 human 51652 CHMP3 charged multivesicular body... NM_001005753.3 70.2% 70.2% 0_1ins198
5 human 51652 CHMP3 charged multivesicular body... NR_036454.2 14.6% (many diffs)
6 mouse 66700 Chmp3 charged multivesicular body... NM_025783.3 89.2% 95.9% (many diffs)
7 mouse 66700 Chmp3 charged multivesicular body... XM_006506480.3 79% 84.3% (many diffs)
8 mouse 66700 Chmp3 charged multivesicular body... XM_017321713.1 79% 84.3% (many diffs)
9 mouse 66700 Chmp3 charged multivesicular body... XM_006506481.3 62.6% 67.4% (many diffs)
10 mouse 66700 Chmp3 charged multivesicular body... XM_006506482.3 62.6% 67.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
732
ORF length:
666
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg gctgtttgga aagacccagg agaagccgcc caaagaactg gtcaatgagt
121ggtcattgaa gataagaaag gaaatgagag ttgttgacag gcaaataagg gatatccaaa
181gagaagaaga aaaagtgaaa cgatctgtga aagatgctgc caagaagggc cagaaggatg
241tctgcatagt tctggccaag gagatgatca ggtcaaggaa ggctgtgagc aagctgtatg
301catccaaagc acacatgaac tcagtgctca tggggatgaa gaaccagctc gcggTCTTGC
361GAGTGGCTGG TTCCCTGCAG AAGAGCACAG AAGTGATGAA GGCCATGCAA AGTCTTGTGA
421AGATTCCAGA GATTCAGGCC ACCATGAGGG AGTTGTCCAA AGAAATGATG AAGGCTGGGA
481TCATAGAGGA GATGTTAGAG GACACTTTTG AAAGCATGGA CGATCAGGAA GAAATGGAGG
541AAGAAGCAGA AATGGAAATT GACAGAATTC TCTTTGAAAT TACAGCAGGG GCCTTGGGCA
601AAGCACCCAG TAAAGTGACT GATGCCCTTC CAGAGCCAGA ACCTCCAGGA GCGATGGCTG
661CCTCAGAGGA TGAGGAGGAG GAGGAAGAGG CTCTGGAGGC CATGCAGTCC CGGCTGGCCA
721CACTCCGCAG CTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
781ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
841CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAGAT TGTGGGACCC CCCCAGGACA
901GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)