Construct: ORF TRCN0000468843

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005672.1_s317c1
Derived from:
ccsbBroadEn_01741
DNA Barcode:
CTGAGCTAAAGGCTACTCTTGCGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBE2V1 (7335)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468843
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001032288.3 100% 100%
2 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257395.2 97.9% 97.9% 21_22insGGAGTAAAA
3 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257393.2 84.7% 82.3% (many diffs)
4 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_021988.6 84.7% 82.3% (many diffs)
5 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_199144.3 84.7% 82.3% (many diffs)
6 human 7336 UBE2V2 ubiquitin conjugating enzym... NM_003350.3 83% 89.1% (many diffs)
7 human 7336 UBE2V2 ubiquitin conjugating enzym... XM_017013808.2 81.4% 86.3% (many diffs)
8 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257396.2 71.4% 71.4% 171_172ins126
9 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257397.2 71.4% 71.4% 0_1ins126
10 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257398.1 71.4% 71.4% 0_1ins126
11 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257399.2 71.4% 71.4% 0_1ins126
12 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001282576.1 71.4% 71.4% 0_1ins126
13 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001282579.1 71.4% 71.4% 0_1ins126
14 human 7336 UBE2V2 ubiquitin conjugating enzym... XM_011517583.3 71.4% 73.9% (many diffs)
15 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257394.2 67.4% 63.9% (many diffs)
16 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_022442.6 67.4% 63.9% (many diffs)
17 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001282575.3 61.4% 61.2% 0_1ins168;2_3delTGinsGA
18 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001282577.3 61.4% 61.2% 0_1ins168;2_3delTGinsGA
19 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001282578.3 61.4% 61.2% 0_1ins168;2_3delTGinsGA
20 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001282580.1 41.9% 37.7% (many diffs)
21 human 387522 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough NM_199203.2 39.2% 38.1% (many diffs)
22 human 7335 UBE2V1 ubiquitin conjugating enzym... NR_047554.2 14.3% (many diffs)
23 human 107986871 LOC107986871 ubiquitin-conjugating enzym... XR_002956669.1 7.4% (many diffs)
24 mouse 66589 Ube2v1 ubiquitin-conjugating enzym... NM_023230.2 87% 93.8% (many diffs)
25 mouse 70620 Ube2v2 ubiquitin-conjugating enzym... NM_023585.4 81.6% 87.7% (many diffs)
26 mouse 66589 Ube2v1 ubiquitin-conjugating enzym... NM_001311131.1 73% 76.3% (many diffs)
27 mouse 66589 Ube2v1 ubiquitin-conjugating enzym... NM_001311146.1 62.8% 68.7% (many diffs)
28 mouse 70620 Ube2v2 ubiquitin-conjugating enzym... XM_011246011.2 58.8% 61.9% (many diffs)
29 mouse 70620 Ube2v2 ubiquitin-conjugating enzym... NM_001159351.1 58.2% 64.6% (many diffs)
30 mouse 66589 Ube2v1 ubiquitin-conjugating enzym... XM_006500014.3 52.4% 54.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
507
ORF length:
441
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agccaccacg ggctcgggag taaaagtccc tcgcaatttc cgactgttgg
121aagaactcga agaaggCCAG AAAGGAGTAG GAGATGGCAC AGTTAGCTGG GGTCTAGAAG
181ATGACGAAGA CATGACACTT ACAAGATGGA CAGGGATGAT AATTGGGCCT CCAAGAACAA
241TTTATGAAAA CCGAATATAC AGCCTTAAAA TAGAATGTGG ACCTAAATAC CCAGAAGCAC
301CCCCCTTTGT AAGATTTGTA ACAAAAATTA ATATGAATGG AGTAAATAGT TCTAATGGAG
361TGGTGGACCC AAGAGCCATA TCAGTGCTAG CAAAATGGCA GAATTCATAT AGCATCAAAG
421TTGTCCTGCA AGAGCTTCGG CGCCTAATGA TGTCTAAAGA AAATATGAAA CTCCCTCAGC
481CGCCCGAAGG ACAGTGTTAC AGCAATTACC CAACTTTCTT GTACAAAGTG GTTGATATCG
541GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
601AACTTGAAAG TATTTCGATT CTTGGCTTTA TATATCTTGT GGAAAGGACG ACTGAGCTAA
661AGGCTACTCT TGCGCACGCG TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa
721agatt

Download FASTA (ORF) (Full)