Construct: ORF TRCN0000471433
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014599.1_s317c1
- Derived from:
- ccsbBroadEn_01306
- DNA Barcode:
- CTGGAATGCCAAGAGGTCTTTGTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PSG6 (5675)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471433
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 5675 | PSG6 | pregnancy specific beta-1-g... | NM_001031850.4 | 100% | 100% | |
2 | human | 5675 | PSG6 | pregnancy specific beta-1-g... | NM_002782.5 | 96.2% | 94.1% | (many diffs) |
3 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_002784.5 | 93.7% | 88% | (many diffs) |
4 | human | 5671 | PSG3 | pregnancy specific beta-1-g... | NM_021016.4 | 92.5% | 87% | (many diffs) |
5 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | NM_182707.3 | 92% | 85% | (many diffs) |
6 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001184825.2 | 92% | 85.5% | (many diffs) |
7 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | NM_001130167.2 | 91.8% | 86.2% | (many diffs) |
8 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001297773.2 | 91.6% | 85.7% | (many diffs) |
9 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_006905.3 | 91.6% | 85.3% | (many diffs) |
10 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_002780.5 | 91.6% | 86.9% | (many diffs) |
11 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001184826.2 | 91.5% | 85.8% | (many diffs) |
12 | human | 5676 | PSG7 | pregnancy specific beta-1-g... | NM_002783.3 | 91.4% | 87.1% | (many diffs) |
13 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | XM_017026997.2 | 91.1% | 86.7% | (many diffs) |
14 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027007.2 | 90.7% | 83.4% | (many diffs) |
15 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027004.2 | 80.4% | 75.1% | (many diffs) |
16 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_001301708.2 | 72.9% | 67.3% | (many diffs) |
17 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_001301707.2 | 72.7% | 68% | (many diffs) |
18 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001330524.2 | 71.7% | 66.8% | (many diffs) |
19 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | XM_005259065.4 | 71.5% | 66.8% | (many diffs) |
20 | human | 5673 | PSG5 | pregnancy specific beta-1-g... | NM_001130014.2 | 71.5% | 65.9% | (many diffs) |
21 | human | 5673 | PSG5 | pregnancy specific beta-1-g... | NM_002781.4 | 71.5% | 65.9% | (many diffs) |
22 | human | 5673 | PSG5 | pregnancy specific beta-1-g... | XM_017027003.1 | 71.5% | 65.9% | (many diffs) |
23 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_001276495.1 | 71.4% | 67.9% | (many diffs) |
24 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_213633.3 | 71.1% | 66.5% | (many diffs) |
25 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | XM_011526986.1 | 71.1% | 65.8% | (many diffs) |
26 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | XM_017027001.2 | 71% | 67.9% | (many diffs) |
27 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | XM_011527125.2 | 70.8% | 64.7% | (many diffs) |
28 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | XM_017027002.2 | 70.8% | 66.5% | (many diffs) |
29 | human | 5670 | PSG2 | pregnancy specific beta-1-g... | NM_031246.4 | 70.3% | 64.5% | (many diffs) |
30 | human | 5680 | PSG11 | pregnancy specific beta-1-g... | NM_002785.3 | 70.3% | 64.2% | (many diffs) |
31 | human | 5671 | PSG3 | pregnancy specific beta-1-g... | XM_011527126.2 | 68.2% | 63.2% | (many diffs) |
32 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | NM_001130168.2 | 65.7% | 61.5% | (many diffs) |
33 | human | 5676 | PSG7 | pregnancy specific beta-1-g... | NM_001206650.2 | 65.3% | 61.5% | (many diffs) |
34 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_001316339.2 | 65.2% | 61.3% | (many diffs) |
35 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | XM_011526987.3 | 64.8% | 58.1% | (many diffs) |
36 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_005259075.4 | 62.5% | 57.3% | (many diffs) |
37 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027005.2 | 62.3% | 57.9% | (many diffs) |
38 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | XM_011526988.2 | 57% | 53.6% | (many diffs) |
39 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_001301709.2 | 51.9% | 47.6% | (many diffs) |
40 | human | 5671 | PSG3 | pregnancy specific beta-1-g... | XM_011527127.2 | 50.2% | 47.4% | (many diffs) |
41 | human | 653492 | PSG10P | pregnancy specific beta-1-g... | NR_026824.1 | 45.6% | (many diffs) | |
42 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027006.2 | 44.4% | 40.4% | (many diffs) |
43 | human | 5680 | PSG11 | pregnancy specific beta-1-g... | NM_001113410.2 | 43.9% | 38.3% | (many diffs) |
44 | human | 5680 | PSG11 | pregnancy specific beta-1-g... | NM_203287.2 | 43.9% | 38.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1338
- ORF length:
- 1272
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg acccctctca gcccctccct gcactcagca catcacctgg aaggggctcc 121 tgctcacagc atcactttta aacttctgga acctgcccac cactgcccaa gtaataattg 181 aagccaagcc acccaaagtt tccgagggga aggatgttct tctacttgtc cacaatttgc 241 cccagaatct tactggctac atctggtaca aagggcaaat gacggacctc taccattaca 301 ttacatcata tgtagtacac ggtcaaatta tatatgggcc tgcctacagt ggacgagaaa 361 cagtatattc caatgcatcc ctgctgatcc agaatgtcac acaggaggat gcaggatcct 421 acaccttaca catcataaag cgaggcgatg ggactggagg agtaactgga tatttcactg 481 tcaccttata ctcggagact cccaagccct ccatctccag cagcaactta aaccccaggg 541 aggtcatgga ggctgtgcgc ttaatctgtg atcctgagac tccggatgca agctacctgt 601 ggttgctgaa tggtcagaac ctccctatga ctcacaggtt gcagctgtcc aaaaccaaca 661 ggaccctcta tctatttggt gtcacaaagt atattgcagg accctatgaa tgtgaaatac 721 ggaacccagt gagtgccagc cgcagtgacc cagtcaccct gaatctcctc ccgaagctgc 781 ccatgcctta catcaccatc aacaacttaa accccaggga gaagaaggat gtgttagcct 841 tcacctgtga acctaagagt cggaactaca ccTACATTTG GTGGCTAAAT GGTCAGAGCC 901 TCCCGGTCAG TCCGAGGGTA AAGCGACCCA TTGAAAACAG GATACTCATT CTACCCAGTG 961 TCACGAGAAA TGAAACAGGA CCCTATCAAT GTGAAATACG GGACCGATAT GGTGGCATCC 1021 GCAGTAACCC AGTCACCCTG AATGTCCTCT ATGGTCCAGA CCTCCCCAGA ATTTACCCTT 1081 CATTCACCTA TTACCGTTCA GGAGAAAACC TCGACTTGTC CTGCTTTGCG GACTCTAACC 1141 CACCGGCAGA GTATTCTTGG ACAATTAATG GGAAGTTTCA GCTATCAGGA CAAAAGCTCT 1201 TTATCCCCCA AATTACTACA AATCATAGCG GGCTCTATGC TTGCTCTGTT CGTAACTCAG 1261 CCACTGGCAA GGAAATCTCC AAATCCATGA TAGTCAAAGT CTCTGGTCCC TGCCATGGAA 1321 ACCAGACAGA GTCTCATTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 1381 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1441 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACTGGAAT GCCAAGAGGT 1501 CTTTGTCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt