Construct: ORF ccsbBroadEn_01306

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014599.1_s300c1, BRDN0000394038
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSG6 (5675)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5675 PSG6 pregnancy specific beta-1-g... NM_001031850.4 100% 100%
2 human 5675 PSG6 pregnancy specific beta-1-g... NM_002782.5 96.2% 94.1% (many diffs)
3 human 5678 PSG9 pregnancy specific beta-1-g... NM_002784.5 93.7% 88% (many diffs)
4 human 5671 PSG3 pregnancy specific beta-1-g... NM_021016.4 92.5% 87% (many diffs)
5 human 440533 PSG8 pregnancy specific beta-1-g... NM_182707.3 92% 85% (many diffs)
6 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184825.2 92% 85.5% (many diffs)
7 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130167.2 91.8% 86.2% (many diffs)
8 human 5669 PSG1 pregnancy specific beta-1-g... NM_001297773.2 91.6% 85.7% (many diffs)
9 human 5669 PSG1 pregnancy specific beta-1-g... NM_006905.3 91.6% 85.3% (many diffs)
10 human 5672 PSG4 pregnancy specific beta-1-g... NM_002780.5 91.6% 86.9% (many diffs)
11 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184826.2 91.5% 85.8% (many diffs)
12 human 5676 PSG7 pregnancy specific beta-1-g... NM_002783.3 91.4% 87.1% (many diffs)
13 human 5672 PSG4 pregnancy specific beta-1-g... XM_017026997.2 91.1% 86.7% (many diffs)
14 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027007.2 90.7% 83.4% (many diffs)
15 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027004.2 80.4% 75.1% (many diffs)
16 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301708.2 72.9% 67.3% (many diffs)
17 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301707.2 72.7% 68% (many diffs)
18 human 5669 PSG1 pregnancy specific beta-1-g... NM_001330524.2 71.7% 66.8% (many diffs)
19 human 5669 PSG1 pregnancy specific beta-1-g... XM_005259065.4 71.5% 66.8% (many diffs)
20 human 5673 PSG5 pregnancy specific beta-1-g... NM_001130014.2 71.5% 65.9% (many diffs)
21 human 5673 PSG5 pregnancy specific beta-1-g... NM_002781.4 71.5% 65.9% (many diffs)
22 human 5673 PSG5 pregnancy specific beta-1-g... XM_017027003.1 71.5% 65.9% (many diffs)
23 human 5672 PSG4 pregnancy specific beta-1-g... NM_001276495.1 71.4% 67.9% (many diffs)
24 human 5672 PSG4 pregnancy specific beta-1-g... NM_213633.3 71.1% 66.5% (many diffs)
25 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526986.1 71.1% 65.8% (many diffs)
26 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027001.2 71% 67.9% (many diffs)
27 human 5669 PSG1 pregnancy specific beta-1-g... XM_011527125.2 70.8% 64.7% (many diffs)
28 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027002.2 70.8% 66.5% (many diffs)
29 human 5670 PSG2 pregnancy specific beta-1-g... NM_031246.4 70.3% 64.5% (many diffs)
30 human 5680 PSG11 pregnancy specific beta-1-g... NM_002785.3 70.3% 64.2% (many diffs)
31 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527126.2 68.2% 63.2% (many diffs)
32 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130168.2 65.7% 61.5% (many diffs)
33 human 5676 PSG7 pregnancy specific beta-1-g... NM_001206650.2 65.3% 61.5% (many diffs)
34 human 5672 PSG4 pregnancy specific beta-1-g... NM_001316339.2 65.2% 61.3% (many diffs)
35 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526987.3 64.8% 58.1% (many diffs)
36 human 5678 PSG9 pregnancy specific beta-1-g... XM_005259075.4 62.5% 57.3% (many diffs)
37 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027005.2 62.3% 57.9% (many diffs)
38 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526988.2 57% 53.6% (many diffs)
39 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301709.2 51.9% 47.6% (many diffs)
40 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527127.2 50.2% 47.4% (many diffs)
41 human 653492 PSG10P pregnancy specific beta-1-g... NR_026824.1 45.6% (many diffs)
42 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027006.2 44.4% 40.4% (many diffs)
43 human 5680 PSG11 pregnancy specific beta-1-g... NM_001113410.2 43.9% 38.3% (many diffs)
44 human 5680 PSG11 pregnancy specific beta-1-g... NM_203287.2 43.9% 38.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1338
ORF length:
1272
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG ACCCCTCTCA GCCCCTCCCT GCACTCAGCA CATCACCTGG AAGGGGCTCC
121TGCTCACAGC ATCACTTTTA AACTTCTGGA ACCTGCCCAC CACTGCCCAA GTAATAATTG
181AAGCCAAGCC ACCCAAAGTT TCCGAGGGGA AGGATGTTCT TCTACTTGTC CACAATTTGC
241CCCAGAATCT TACTGGCTAC ATCTGGTACA AAGGGCAAAT GACGGACCTC TACCATTACA
301TTACATCATA TGTAGTACAC GGTCAAATTA TATATGGGCC TGCCTACAGT GGACGAGAAA
361CAGTATATTC CAATGCATCC CTGCTGATCC AGAATGTCAC ACAGGAGGAT GCAGGATCCT
421ACACCTTACA CATCATAAAG CGAGGCGATG GGACTGGAGG AGTAACTGGA TATTTCACTG
481TCACCTTATA CTCGGAGACT CCCAAGCCCT CCATCTCCAG CAGCAACTTA AACCCCAGGG
541AGGTCATGGA GGCTGTGCGC TTAATCTGTG ATCCTGAGAC TCCGGATGCA AGCTACCTGT
601GGTTGCTGAA TGGTCAGAAC CTCCCTATGA CTCACAGGTT GCAGCTGTCC AAAACCAACA
661GGACCCTCTA TCTATTTGGT GTCACAAAGT ATATTGCAGG ACCCTATGAA TGTGAAATAC
721GGAACCCAGT GAGTGCCAGC CGCAGTGACC CAGTCACCCT GAATCTCCTC CCGAAGCTGC
781CCATGCCTTA CATCACCATC AACAACTTAA ACCCCAGGGA GAAGAAGGAT GTGTTAGCCT
841TCACCTGTGA ACCTAAGAGT CGGAACTACA CCTACATTTG GTGGCTAAAT GGTCAGAGCC
901TCCCGGTCAG TCCGAGGGTA AAGCGACCCA TTGAAAACAG GATACTCATT CTACCCAGTG
961TCACGAGAAA TGAAACAGGA CCCTATCAAT GTGAAATACG GGACCGATAT GGTGGCATCC
1021GCAGTAACCC AGTCACCCTG AATGTCCTCT ATGGTCCAGA CCTCCCCAGA ATTTACCCTT
1081CATTCACCTA TTACCGTTCA GGAGAAAACC TCGACTTGTC CTGCTTTGCG GACTCTAACC
1141CACCGGCAGA GTATTCTTGG ACAATTAATG GGAAGTTTCA GCTATCAGGA CAAAAGCTCT
1201TTATCCCCCA AATTACTACA AATCATAGCG GGCTCTATGC TTGCTCTGTT CGTAACTCAG
1261CCACTGGCAA GGAAATCTCC AAATCCATGA TAGTCAAAGT CTCTGGTCCC TGCCATGGAA
1321ACCAGACAGA GTCTCATTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1381gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)