Construct: ORF TRCN0000474884

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009198.1_s317c1
Derived from:
ccsbBroadEn_06487
DNA Barcode:
GAAATACACGTCGTTCCGCTTCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KIR2DL3 (3804)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474884
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3804 KIR2DL3 killer cell immunoglobulin ... NM_015868.3 99.6% 99.1% (many diffs)
2 human 3803 KIR2DL2 killer cell immunoglobulin ... NM_014219.2 95.1% 92.8% (many diffs)
3 human 112267881 LOC112267881 killer cell immunoglobulin-... NM_001368251.1 92.8% 88.8% (many diffs)
4 human 3802 KIR2DL1 killer cell immunoglobulin ... NM_014218.3 92.7% 88.8% (many diffs)
5 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_012312.4 86.9% 84.7% (many diffs)
6 human 100132285 KIR2DS2 killer cell immunoglobulin ... XM_017030275.2 86.9% 84.7% (many diffs)
7 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_001291695.1 86% 83% (many diffs)
8 human 3806 KIR2DS1 killer cell immunoglobulin ... NM_014512.1 84.7% 80.6% (many diffs)
9 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_011547998.2 84.7% 80.6% (many diffs)
10 human 102725023 LOC102725023 killer cell immunoglobulin-... NM_001360171.1 84.1% 79.1% (many diffs)
11 human 3810 KIR2DS5 killer cell immunoglobulin ... NM_014513.2 84% 79.4% (many diffs)
12 human 3808 KIR2DS3 killer cell immunoglobulin ... NM_012313.1 83.9% 78.8% (many diffs)
13 human 3809 KIR2DS4 killer cell immunoglobulin ... NM_012314.6 83.5% 78% (many diffs)
14 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_001291701.1 82.1% 80.3% (many diffs)
15 human 3802 KIR2DL1 killer cell immunoglobulin ... XM_017026782.1 78% 74.4% (many diffs)
16 human 3813 KIR3DS1 killer cell immunoglobulin ... NM_001282170.1 76% 63.9% (many diffs)
17 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_024452542.1 74.7% 67.1% (many diffs)
18 human 3813 KIR3DS1 killer cell immunoglobulin ... NM_001282171.1 73.4% 61.9% (many diffs)
19 human 3811 KIR3DL1 killer cell immunoglobulin ... NM_001322168.1 70.9% 64.4% (many diffs)
20 human 3811 KIR3DL1 killer cell immunoglobulin ... NM_013289.2 70.8% 64.4% (many diffs)
21 human 3802 KIR2DL1 killer cell immunoglobulin ... XM_017026783.1 69.6% 62.9% (many diffs)
22 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_024452543.1 69.5% 65.9% (many diffs)
23 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_024452544.1 69.5% 65.9% (many diffs)
24 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_024452545.1 69.5% 65.9% (many diffs)
25 human 3812 KIR3DL2 killer cell immunoglobulin ... NM_006737.4 68.8% 63.2% (many diffs)
26 human 3809 KIR2DS4 killer cell immunoglobulin ... NM_001281971.2 65.8% 45.7% (many diffs)
27 human 3812 KIR3DL2 killer cell immunoglobulin ... NM_001242867.2 65.5% 60.4% (many diffs)
28 human 115653 KIR3DL3 killer cell immunoglobulin ... NM_153443.4 64.8% 57.7% (many diffs)
29 human 3806 KIR2DS1 killer cell immunoglobulin ... XM_017030286.1 64.4% 60.4% (many diffs)
30 human 3802 KIR2DL1 killer cell immunoglobulin ... XM_011526939.2 64.2% 60.1% (many diffs)
31 human 3812 KIR3DL2 killer cell immunoglobulin ... XM_011526940.3 61.8% 56.7% (many diffs)
32 human 3809 KIR2DS4 killer cell immunoglobulin ... NM_001281972.2 61% 44.6% (many diffs)
33 human 3813 KIR3DS1 killer cell immunoglobulin ... NM_001083539.2 59.8% 50.2% (many diffs)
34 human 112268355 LOC112268355 killer cell immunoglobulin-... NM_001368254.1 59.8% 50.2% (many diffs)
35 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_001291696.1 57.8% 56% (many diffs)
36 human 3811 KIR3DL1 killer cell immunoglobulin ... XM_017030274.1 56.7% 44.6% (many diffs)
37 human 3812 KIR3DL2 killer cell immunoglobulin ... XM_017026784.2 51% 46.2% (many diffs)
38 human 100132285 KIR2DS2 killer cell immunoglobulin ... NM_001291700.1 25.6% 27.2% (many diffs)
39 human 107987438 LOC107987438 uncharacterized LOC107987438 XR_001756645.1 24.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1089
ORF length:
1023
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc gctcattgtc gtcagcatgg tgtgtgttgg gttcttcttg ctgcaggggg
121cctggccaca tgagggagtc cacagaaaac cttccctcct ggcccaccca ggtcccctgg
181tgaaatcaga agagacagtc atcctgcaat gttggtcaga tgtcaggttt cagcacttcc
241ttctgcacag agaagggaag tttaaggaca ctttgcacct cattggagag caccatgatg
301gggtctccaa ggccaacttc tccatcggtc ccatgatgca agaccttgca gggacctaca
361gatgctacgg ttctgttact cactccccct atcagttgtc agctcccagt gaccctctgg
421acatcgtcat cacaggtcta tatgagaaac cttctctctc agcccagccg ggccccacgg
481ttctggcagg agagagcgtg accttgtcct gcagctcccg gagctcctat gacatgtacc
541atctatccag ggagggggag gcccatgaac gtaggttctc tgcagggccc aaggtcaacg
601gaaCATTCCA GGCCGACTTT CCTCTGGGCC CTGCCACCCA CGGAGGAACC TACAGATGCT
661TCGGCTCTTT CCGTGACTCT CCATACGAGT GGTCAAACTC GAGTGACCCA CTGCTTGTTT
721CTGTCACAGG AAACCCTTCA AATAGTTGGC TTTCACCCAC TGAACCAAGC TCCGAAACCG
781GTAACCCCAG ACACCTGCAT GTTCTGATTG GGACCTCAGT GGTCATCATC CTCTTCATCC
841TCCTCCTCTT CTTTCTCCTT CATCGCTGGT GCTGCAACAA AAAAAATGCT GTTGTAATGG
901ACCAAGAGCC TGCAGGGAAC AGAACAGTGA ACAGGGAGGA CTCTGATGAA CAAGACCCTC
961AGGAGGTGAC ATATGCACAG TTGAATCACT GCGTTTTCAC ACAGAGAAAA ATCACTCACC
1021CTTCTCAGAG GCCCAAGACA CCCCCAACAG ATATCATCGT GTACACGGAA CTTCCTAATG
1081CTGAGCCCTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1141CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1201TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGAAATA CACGTCGTTC CGCTTCCCAC
1261GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)