Construct: ORF TRCN0000476380
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014279.1_s317c1
- Derived from:
- ccsbBroadEn_10341
- DNA Barcode:
- AGTGATAACGTTCAAGGTCGCGGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GOLGA8G (283768)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476380
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001368080.1 | 100% | 100% | |
| 2 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449812.1 | 100% | 100% | |
| 3 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449813.1 | 100% | 100% | |
| 4 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001368078.1 | 99% | 99% | 585_596del |
| 5 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449810.1 | 95.3% | 95.3% | 753_815del |
| 6 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449811.1 | 95.3% | 95.3% | 753_815del |
| 7 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449906.1 | 95.3% | 95.3% | 753_815del |
| 8 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449907.1 | 95.3% | 95.3% | 753_815del |
| 9 | human | 653061 | GOLGA8S | golgin A8 family member S | NM_001355465.1 | 90.4% | 85.6% | (many diffs) |
| 10 | human | 653061 | GOLGA8S | golgin A8 family member S | XM_024450030.1 | 90.4% | 85.6% | (many diffs) |
| 11 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521951.3 | 78.5% | 71.1% | (many diffs) |
| 12 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521954.3 | 78.5% | 71.1% | (many diffs) |
| 13 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_024450037.1 | 78.5% | 71.1% | (many diffs) |
| 14 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450034.1 | 77.8% | 69.4% | (many diffs) |
| 15 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450035.1 | 77.8% | 69.4% | (many diffs) |
| 16 | human | 728047 | GOLGA8O | golgin A8 family member O | XM_024450042.1 | 77.6% | 68.8% | (many diffs) |
| 17 | human | 23015 | GOLGA8A | golgin A8 family member A | XM_017022020.2 | 71.6% | 63.8% | (many diffs) |
| 18 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_024450036.1 | 68.6% | 62.1% | (many diffs) |
| 19 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450033.1 | 68% | 60.7% | (many diffs) |
| 20 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001350919.2 | 66.3% | 66.3% | 1_654del |
| 21 | human | 100132565 | GOLGA8F | golgin A8 family member F | NM_001350920.1 | 66.3% | 66.3% | 1_654del |
| 22 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449809.1 | 64.3% | 64.3% | 1_651del;1404_1466del |
| 23 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449905.1 | 64.3% | 64.3% | 1_651del;1404_1466del |
| 24 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449808.1 | 64.2% | 64.2% | 1_654del;1407_1469del |
| 25 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449904.1 | 64.2% | 64.2% | 1_654del;1407_1469del |
| 26 | human | 653061 | GOLGA8S | golgin A8 family member S | XM_024450031.1 | 64% | 55.2% | (many diffs) |
| 27 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_006720654.3 | 61.2% | 55.3% | (many diffs) |
| 28 | human | 653073 | GOLGA8J | golgin A8 family member J | XM_006720651.3 | 61.1% | 54.8% | (many diffs) |
| 29 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450032.1 | 60.6% | 54% | (many diffs) |
| 30 | human | 653720 | GOLGA8M | golgin A8 family member M | NM_001282468.1 | 59.9% | 54.2% | (many diffs) |
| 31 | human | 653073 | GOLGA8J | golgin A8 family member J | NM_001282472.1 | 59.8% | 53.7% | (many diffs) |
| 32 | human | 728498 | GOLGA8H | golgin A8 family member H | NM_001282490.1 | 59.7% | 53.4% | (many diffs) |
| 33 | human | 653075 | GOLGA8T | golgin A8 family member T | NM_001355469.1 | 59.4% | 52.9% | (many diffs) |
| 34 | human | 728047 | GOLGA8O | golgin A8 family member O | NM_001277308.1 | 59.2% | 52.5% | (many diffs) |
| 35 | human | 643699 | GOLGA8N | golgin A8 family member N | NM_001282494.1 | 59.2% | 52.5% | (many diffs) |
| 36 | human | 653125 | GOLGA8K | golgin A8 family member K | NM_001282493.1 | 59.1% | 52.9% | (many diffs) |
| 37 | human | 727909 | GOLGA8Q | golgin A8 family member Q | NM_001355476.1 | 59.1% | 52.2% | (many diffs) |
| 38 | human | 101059918 | GOLGA8R | golgin A8 family member R | NM_001282484.1 | 58.8% | 51.5% | (many diffs) |
| 39 | human | 728047 | GOLGA8O | golgin A8 family member O | XM_011521988.3 | 55.9% | 49.2% | (many diffs) |
| 40 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_005268284.5 | 55.9% | 50.5% | (many diffs) |
| 41 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_181077.4 | 55.5% | 49.5% | (many diffs) |
| 42 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_001368071.2 | 55.5% | 49.5% | (many diffs) |
| 43 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_001368072.1 | 55.5% | 49.5% | (many diffs) |
| 44 | human | 440270 | GOLGA8B | golgin A8 family member B | NM_001023567.5 | 55.5% | 49.3% | (many diffs) |
| 45 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_005268285.5 | 52.8% | 47.5% | (many diffs) |
| 46 | human | 100132565 | GOLGA8F | golgin A8 family member F | XR_002957623.1 | 42.6% | 1_716del;1376_1377ins92;1571_1572ins343 | |
| 47 | human | 283768 | GOLGA8G | golgin A8 family member G | XR_002957634.1 | 42.6% | 1_716del;1376_1377ins92;1571_1572ins343 | |
| 48 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521952.3 | 39.3% | 31.5% | (many diffs) |
| 49 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017030255.2 | 33.1% | 28% | (many diffs) |
| 50 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017030256.2 | 33.1% | 28% | (many diffs) |
| 51 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017030316.2 | 33.1% | 28% | (many diffs) |
| 52 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017030317.2 | 33.1% | 28% | (many diffs) |
| 53 | human | 653073 | GOLGA8J | golgin A8 family member J | XM_011521950.2 | 33% | 27.5% | (many diffs) |
| 54 | human | 101930434 | LOC101930434 | putative golgin subfamily A... | XM_017022809.1 | 32.9% | 27.5% | (many diffs) |
| 55 | human | 653073 | GOLGA8J | golgin A8 family member J | XR_002957674.1 | 31.9% | (many diffs) | |
| 56 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521953.3 | 30.7% | 25.8% | (many diffs) |
| 57 | human | 100132565 | GOLGA8F | golgin A8 family member F | NR_033351.1 | 28.5% | 1_1015del;2306_4511del | |
| 58 | human | 390535 | GOLGA8EP | golgin A8 family member E, ... | NR_033350.1 | 24.1% | (many diffs) | |
| 59 | human | 729786 | GOLGA8CP | golgin A8 family member C, ... | NR_027411.2 | 24% | (many diffs) | |
| 60 | human | 100132979 | GOLGA8DP | golgin A8 family member D, ... | NR_027407.1 | 23.9% | (many diffs) | |
| 61 | human | 440270 | GOLGA8B | golgin A8 family member B | NR_027410.1 | 16% | (many diffs) | |
| 62 | human | 23015 | GOLGA8A | golgin A8 family member A | NR_027409.2 | 15.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1359
- ORF length:
- 1290
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagtggaag ttagagcagt ccatgcggga gcaggcactg ctgaaagcgc 121 agctgacaca gttgaaggag tcacttaaag aagtccagct agagagggat gaatatgctg 181 aacatctaaa aggagagagg gcccggtggc agcagaggat gagaaaaatg tcgcaggagg 241 tttgctcgtt gaagaaggag aagaagcatg ataaatatcg ggtagagaag ctggagagga 301 gcttgtccaa actcaaacac cagatggctg aacctctgcc cccggagccc ccagcagtgc 361 cctctgaggt ggagctgcag cacctgagga aggaactaga gagagtggca ggagagctcc 421 aggcccaggt ggagtacaat cagcgcataa gtctcctgaa tgaggggcaa aaggagaggc 481 ttcgggagca ggaggagagg cttcaggagc agcaggagag gcttccagag caggaggaga 541 ggcttcagca gctggccgag ccacagaaca gcttcaagga gctgaacaat gagaacaaga 601 gcgtactaca gttggagcag caagtaaagg agctgcagga gaagctaggc aaggagcgtc 661 tggaagctgc gagccagcag aaacagcagc taacggccca gttgagcctc atggctctcc 721 ctggggaagg agatggagga ggacatctgg acagtgaggg ggaggaggca cctcggccca 781 ttcctagcat cccacaggac ctggagagca gggaggccat gagcggcttt atggaccacc 841 tggaggagaa ggcagacctg agtgagctgg tggagaaaga agaacttgga ttcttccagt 901 actacagaga gagatgccat cagaaagttt atcaccctat aacaaagcca gggggcagtg 961 ccaaagatgc agcaccggga ggaggacacc aTCAGGCTGG CCCTGGACAG GGAGGAGATG 1021 AAGGTGAAGC TGCTGGAGCT GCAGGAGATG GTGTTGCAGC TGGTGGCGAC TACAAGGGAC 1081 ACAGCAAATT CTTGGTGACT GCCCAGAACC CTGCTCATGA GCCCAGTCCA GGAGCCCCAG 1141 CCCCCCAGGA GCTTGGGGCT GCCCACAAGC ATGGTGATCT TTGTGAGGTG AGCCTCACTG 1201 ACAGCGTGGA GCCTGTGCAA GGAGAGGCCA GGGAGGGTTC TCCCCACGAC AACCCTACTG 1261 CACAGCCGAT CGTGCAGGAC CACCAGGAGC ACCCAGGCTT GGGCAGCAAC TGCTGTGTGC 1321 CATTCTTTTG CTGGGCTTGG CTGCCAAGAA GAAGGAGATT GCCAACTTTC TTGTACAAAG 1381 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1441 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1501 ACGAAGTGAT AACGTTCAAG GTCGCGGAAC GCGTTAAGTC gacaatcaac ctctggatta 1561 caaaatttgt gaaagatt