Construct: ORF TRCN0000480289
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014019.1_s317c1
- Derived from:
- ccsbBroadEn_16172
- DNA Barcode:
- TACTAACTTATTTTTTGACAAACC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480289
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 653061 | GOLGA8S | golgin A8 family member S | XM_024450031.1 | 18.6% | 18.5% | 0_1ins24;170_882del |
| 2 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001368080.1 | 14.9% | 14.8% | 194_1290del |
| 3 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449812.1 | 14.9% | 14.8% | 194_1290del |
| 4 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449813.1 | 14.9% | 14.8% | 194_1290del |
| 5 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001368078.1 | 14.8% | 14.7% | 194_1302del |
| 6 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449810.1 | 14.2% | 14.1% | 194_1353del |
| 7 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449811.1 | 14.2% | 14.1% | 194_1353del |
| 8 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449906.1 | 14.2% | 14.1% | 194_1353del |
| 9 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449907.1 | 14.2% | 14.1% | 194_1353del |
| 10 | human | 653061 | GOLGA8S | golgin A8 family member S | NM_001355465.1 | 13.4% | 13.3% | 0_1ins24;170_1236del |
| 11 | human | 653061 | GOLGA8S | golgin A8 family member S | XM_024450030.1 | 13.4% | 13.3% | 0_1ins24;170_1236del |
| 12 | human | 653073 | GOLGA8J | golgin A8 family member J | XM_011521950.2 | 12.9% | 12% | (many diffs) |
| 13 | human | 23015 | GOLGA8A | golgin A8 family member A | XM_017022020.2 | 12.5% | 10.6% | (many diffs) |
| 14 | human | 728047 | GOLGA8O | golgin A8 family member O | XM_011521989.3 | 12.3% | 10.6% | (many diffs) |
| 15 | human | 100132565 | GOLGA8F | golgin A8 family member F | XR_002957623.1 | 12.2% | 1_716del;910_1571del | |
| 16 | human | 283768 | GOLGA8G | golgin A8 family member G | XR_002957634.1 | 12.2% | 1_716del;910_1571del | |
| 17 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521951.3 | 12.1% | 11.4% | (many diffs) |
| 18 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521954.3 | 12.1% | 11.4% | (many diffs) |
| 19 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_024450037.1 | 12.1% | 11.4% | (many diffs) |
| 20 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450034.1 | 12% | 11.2% | (many diffs) |
| 21 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450035.1 | 12% | 11.2% | (many diffs) |
| 22 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521953.3 | 11.7% | 11.1% | (many diffs) |
| 23 | human | 728047 | GOLGA8O | golgin A8 family member O | XM_024450042.1 | 11.5% | 9.9% | (many diffs) |
| 24 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_024450036.1 | 10.5% | 9.9% | (many diffs) |
| 25 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450033.1 | 10.5% | 9.8% | (many diffs) |
| 26 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521952.3 | 10.4% | 9.8% | (many diffs) |
| 27 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001350919.2 | 9.9% | 9.8% | 1_654del;848_1944del |
| 28 | human | 100132565 | GOLGA8F | golgin A8 family member F | NM_001350920.1 | 9.9% | 9.8% | 1_654del;848_1944del |
| 29 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449809.1 | 9.6% | 9.5% | 1_651del;845_2004del |
| 30 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449905.1 | 9.6% | 9.5% | 1_651del;845_2004del |
| 31 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449808.1 | 9.6% | 9.5% | 1_654del;848_2007del |
| 32 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449904.1 | 9.6% | 9.5% | 1_654del;848_2007del |
| 33 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_001368071.2 | 9.5% | 8.1% | (many diffs) |
| 34 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_001368072.1 | 9.5% | 8.1% | (many diffs) |
| 35 | human | 440270 | GOLGA8B | golgin A8 family member B | NM_001023567.5 | 9.5% | 8.1% | (many diffs) |
| 36 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_181077.4 | 9.5% | 8.1% | (many diffs) |
| 37 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_006720654.3 | 9.4% | 8.8% | (many diffs) |
| 38 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450032.1 | 9.3% | 8.7% | (many diffs) |
| 39 | human | 653073 | GOLGA8J | golgin A8 family member J | XM_006720651.3 | 9.3% | 8.7% | (many diffs) |
| 40 | human | 653720 | GOLGA8M | golgin A8 family member M | NM_001282468.1 | 9.2% | 8.7% | (many diffs) |
| 41 | human | 728498 | GOLGA8H | golgin A8 family member H | NM_001282490.1 | 9.2% | 8.7% | (many diffs) |
| 42 | human | 283796 | GOLGA8IP | golgin A8 family member I, ... | NR_024074.1 | 9.2% | (many diffs) | |
| 43 | human | 653125 | GOLGA8K | golgin A8 family member K | NM_001282493.1 | 9.2% | 8.7% | (many diffs) |
| 44 | human | 653075 | GOLGA8T | golgin A8 family member T | NM_001355469.1 | 9.1% | 8.5% | (many diffs) |
| 45 | human | 653073 | GOLGA8J | golgin A8 family member J | NM_001282472.1 | 9.1% | 8.5% | (many diffs) |
| 46 | human | 728047 | GOLGA8O | golgin A8 family member O | XM_011521988.3 | 9.1% | 7.8% | (many diffs) |
| 47 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_005268285.5 | 8.9% | 8.3% | (many diffs) |
| 48 | human | 101059918 | GOLGA8R | golgin A8 family member R | NM_001282484.1 | 8.8% | 7.6% | (many diffs) |
| 49 | human | 728047 | GOLGA8O | golgin A8 family member O | NM_001277308.1 | 8.8% | 7.5% | (many diffs) |
| 50 | human | 643699 | GOLGA8N | golgin A8 family member N | NM_001282494.1 | 8.8% | 7.5% | (many diffs) |
| 51 | human | 727909 | GOLGA8Q | golgin A8 family member Q | NM_001355476.1 | 8.7% | 7.4% | (many diffs) |
| 52 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_005268284.5 | 8.6% | 8.1% | (many diffs) |
| 53 | human | 653073 | GOLGA8J | golgin A8 family member J | XR_002957674.1 | 7.5% | (many diffs) | |
| 54 | human | 100132565 | GOLGA8F | golgin A8 family member F | NR_033351.1 | 4.2% | 1_1015del;1209_4511del | |
| 55 | human | 390535 | GOLGA8EP | golgin A8 family member E, ... | NR_033350.1 | 3.6% | 1_1015del;1209_5269del | |
| 56 | human | 729786 | GOLGA8CP | golgin A8 family member C, ... | NR_027411.2 | 3.6% | 1_1015del;1209_5282del | |
| 57 | human | 100132979 | GOLGA8DP | golgin A8 family member D, ... | NR_027407.1 | 3.6% | 1_1015del;1209_5339del | |
| 58 | human | 440270 | GOLGA8B | golgin A8 family member B | NR_027410.1 | 2.6% | (many diffs) | |
| 59 | human | 23015 | GOLGA8A | golgin A8 family member A | NR_027409.2 | 2.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 229
- ORF end:
- 424
- ORF length:
- 195
- Sequence:
-
1 GGGGGGAGGG GTTTTATGCG ATGGAGTTTC CCCACACTGA GTGGGTGGAG ACTGAAGTTA 61 GGCCAGCTTG GCACTTGATG TAATTCTCCT TGGAATTTGC CCTTTTTGAG TTTGGATCTT 121 GGTTCATTCT CAAGCCTCAG ACAGTGGTTC AAAGTTTTTT TCTTCCATTT CAGGTGTCGT 181 GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG TTGGCGCCAT GGAGTGGAAG 241 TTAGAGCAGT CCATGCGGGA GCAGGCACTG CTGAAAGCGC AGCTGACACA GTTGAAGGAG 301 TCACTTAAAG AAGTCCAGCT AGAGAGGGAT GAATATGCTG AACATCTAAA AGGAGAGAGG 361 GCCCGGTGGC AGCAGAGGAT GAGAAAAATG TCGCAGGAGG TTTGCTCGTT GAAGAAGGAG 421 ATTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT 481 CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG 541 GCTTTATATA TCTTGTGGAA AGGACGATAC TAACTTATTT TTTGACAAAC CACGCGTTAA 601 GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t