Construct: ORF ccsbBroad304_09120

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005923.1_s304c1, BRDN0000410797
Derived from:
ccsbBroadEn_09120
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMTC1 (83857)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09120
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83857 TMTC1 transmembrane O-mannosyltra... NM_175861.3 99.9% 99.8% 954T>C;2116G>T
2 human 83857 TMTC1 transmembrane O-mannosyltra... XM_024449218.1 90.9% 90.9% 407_408ins207;747T>C;1909G>T
3 human 83857 TMTC1 transmembrane O-mannosyltra... NM_001193451.2 87.6% 87.6% 1_324del;1278T>C;2440G>T
4 human 83857 TMTC1 transmembrane O-mannosyltra... NM_001367875.2 81.9% 81.8% (many diffs)
5 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020004.1 81.1% 79% (many diffs)
6 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020005.1 79.8% 79.8% (many diffs)
7 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020007.2 76.5% 72.9% (many diffs)
8 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020003.1 76% 75.9% (many diffs)
9 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020006.1 52.2% 51.9% (many diffs)
10 mouse 387314 Tmtc1 transmembrane and tetratric... NM_198967.5 69.1% 73% (many diffs)
11 mouse 387314 Tmtc1 transmembrane and tetratric... NM_001347518.1 65.3% 69% (many diffs)
12 mouse 387314 Tmtc1 transmembrane and tetratric... XM_006507072.3 64.4% 66.9% (many diffs)
13 mouse 387314 Tmtc1 transmembrane and tetratric... XM_011241620.2 46.4% 47.7% (many diffs)
14 mouse 387314 Tmtc1 transmembrane and tetratric... XM_017321670.1 45.4% 46.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2388
ORF length:
2322
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa cccattctac tttcatgcag taaatataat tttacactgc ttagtgactc
121ttgtgctgat gtacacctgt gataaaactg tcttcaagaa tcgtggactt gcttttgtaa
181cggcattgct ttttgctgta catcctattc atactgaggc ggtggctggg atcgttggca
241gagcggacgt gttagcgtgt ctgctgtttc tattggcctt tctctcgtac aacaggagtc
301tggatcaggg ctgtgttggg ggaagtttcc cttccacggt gtctcccttc ttcttgctgc
361tcagtttgtt tctggggacc tgtgcgatgc tggtgaaaga gacaggcatc acggtgtttg
421gagtgtgctt ggtttatgac ctcttttccc tttccaacaa gcaagacaag tcgagcaatg
481gggccctctg tccacgcagc ccacagcagc ccgggagccc ccagccctcc tcactgccag
541gccatcctca ccgggagaat gggaagcagc agcggttccc tcacaaagga gcttggggtg
601gctgccactc tccactgcca ccagaaccca agagcagtgg attcccagtg tccccacgag
661ctgtgtggtc catgatgaga ttcctcacct attcctacct cttggccttc aatgtgtggc
721ttctgcttgc acccgtgacc ctgtgctatg actggcaggt cggcagtatt cctctggtag
781agaccatatg ggacatgcgg aacttagcca ccatctttct ggcggttgtg atggccttat
841tgagcctgca ctgcttagca gcctttaaga gactggagca caaggaggtt ttagtcggct
901tgttgttcct ggtgttcccg ttcattccag ccagcaacct cttcttcagg gtgggttttg
961tggtggcgga gagagtcctt tacatgccta gcatgggcta ctgcatcctt tttgtgcacg
1021gactgagcaa gctctgcact tggctgaatc gatgtggggc caccaccctg attgtgtcca
1081ctgtgttgct gctgttgctt ttctcttgga aaactgtgaa acagaatgaa atttggctgt
1141caagagagtc cctattcagg tctggagttc aaactctgcc ccacaatgcc aaggttcact
1201acaactatgc caatttcctg aaggaccaag gtcggaacaa ggaagcgatc taccactaca
1261gaacagctct caagttgtat ccacgccatg caagtgcgct caacaacctt ggaacactga
1321cgagagacac agcagaggca aagatgtact atcagagggc tctccagctc catccacagc
1381ataaccgggc tcttttcaat ctggggaatc tcctcaagtc ccaggagaaa aaggaagaag
1441ctatcacctt actgaaggat tccatcaaat atggtccaga gtttgcagat gcatattcaa
1501gcttagcttc gttattggct gagcaggagc ggtttaaaga agctgaagaa atataccaaa
1561ctggaataaa gaactgtcca gacagctcag atttacacaa caactatggg gttttcttag
1621ttgatactgg cttaccagaa aaggcagtgg cccattacca gcaggccatc aaacttagcc
1681ccagtcatca cgtggccatg gtgaacttgg gaagactcta caggtcactg ggagagaaca
1741gcatggctga agaatggtac aagcgcgccc tgcaggtggc acacaaagct gagatattgt
1801cacctttggg agcactgtat tacaacactg gccgatacga agaggctttg cagatttacc
1861aggaagctgc agcacttcag ccttctcaga gggagctccg cttggcactg gctcaggttt
1921tggccgtgat gggtcagaca aaagaagctg aaaagatgac caatcacatt gtgtcagagg
1981agaccggatg ccttgaatgc tatcgcctct tgtcagccat ctatagcaag caggagaacc
2041acgacaaggc acttgatgct atagacaagg ctctccagct gaaaccaaag gacccaaaag
2101tcatttctga actttttttc acaaaaggaa accaattaag agagcagaac cttctcgaca
2161aagcttttga gagctataga ttggctgtgc aactaaaccc agaccaagca caggcctgga
2221tgaacatggg tggcatccaa cacatcaagg gaaaatatgt gtctgcaaga gcttattatg
2281agagagcctt acagctggtt ccagacagca aactgctgaa ggaaaatctt gccaaattgg
2341atcgcctaga aaaacgatta caagaagttc gagaaaagga tcaaacatac ccaactttct
2401tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
2461aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

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