Construct: ORF ccsbBroadEn_02903

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011478.1_s300c1, BRDN0000456570
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NSMF (26012)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26012 NSMF NMDA receptor synaptonuclea... NM_015537.4 100% 100%
2 human 26012 NSMF NMDA receptor synaptonuclea... NM_001130969.1 99.6% 99.6% 704_709delCCATCT
3 human 26012 NSMF NMDA receptor synaptonuclea... NM_001130970.1 95.8% 95.6% 704_705ins53;706A>G;710_710delCinsGTAATCCAGAG
4 human 26012 NSMF NMDA receptor synaptonuclea... NM_001130971.1 95.6% 95.6% 704_705ins69
5 human 26012 NSMF NMDA receptor synaptonuclea... XM_005266061.5 94.3% 94.3% 825_826ins90
6 human 26012 NSMF NMDA receptor synaptonuclea... NM_001178064.1 93.9% 93.9% 704_709delCCATCT;831_832ins90
7 human 26012 NSMF NMDA receptor synaptonuclea... XM_011518496.3 90.2% 89.9% (many diffs)
8 human 26012 NSMF NMDA receptor synaptonuclea... XM_005266062.5 89.9% 89.9% 704_705ins69;756_757ins90
9 human 26012 NSMF NMDA receptor synaptonuclea... XM_017014597.2 59.4% 47.7% (many diffs)
10 human 26012 NSMF NMDA receptor synaptonuclea... XM_011518497.2 49.8% 49.8% 0_1ins795
11 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_001039387.1 89.2% 93.9% (many diffs)
12 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_001039386.1 88.9% 93.6% (many diffs)
13 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_001177654.1 88.7% 93.3% (many diffs)
14 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_020276.3 85.3% 89.6% (many diffs)
15 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_006498200.1 85.1% 89.6% (many diffs)
16 mouse 56876 Nsmf NMDA receptor synaptonuclea... NM_001177655.1 83.8% 88.3% (many diffs)
17 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_006498201.1 83.5% 87.9% (many diffs)
18 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319141.1 80.5% 84.6% (many diffs)
19 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319140.1 80.2% 84.4% (many diffs)
20 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_006498202.3 79.9% 83.9% (many diffs)
21 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_006498203.3 79.6% 83.9% (many diffs)
22 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319142.1 76.9% 80.7% (many diffs)
23 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319143.1 76.7% 80.7% (many diffs)
24 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319144.1 57% 60.3% (many diffs)
25 mouse 56876 Nsmf NMDA receptor synaptonuclea... XM_017319145.1 53.6% 56.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1653
ORF length:
1584
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGCGCCGCC GCCTCCAGGA GGAGGGCGCT GAGGAGCGAG GCCATGTCCT
121CGGTGGCGGC CAAAGTGCGA GCAGCCCGAG CGTTTGGAGA GTACCTGTCC CAGAGTCACC
181CTGAGAACCG CAACGGCGCA GATCACCTGC TGGCTGATGC CTACTCTGGC CACGACGGGT
241CCCCCGAGAT GCAGCCGGCC CCCCAGAACA AGCGCCGCCT GTCCCTCGTC TCCAACGGCT
301GCTACGAGGG CAGCCTCTCA GAGGAGCCCA GCATTAGGAA GCCCGCAGGC GAGGGCCCTC
361AGCCTCGAGT GTACACCATC TCTGGGGAGC CTGCCCTGCT GCCCAGCCCT GAGGCGGAGG
421CCATTGAGCT GGCGGTGGTG AAGGGGCGGC GGCAGCGGCA CCCTCACCAT CACAGCCAGC
481CCCTGCGCGC CAGCCCTGGT GGCAGCCGGG AGGACGTCAG CAGGCCCTGC CAGAGCTGGG
541CGGGCAGCCG CCAGGGCTCC AAGGAGTGCC CCGGATGTGC CCAGCTGGCT CCTGGCCCCA
601CCCCTCGGGC CTTTGGGCTG GACCAGCCAC CTCTGCCTGA GACCTCCGGT CGCCGCAAGA
661AGCTGGAGAG GATGTACAGC GTTGACCGTG TGTCTGACGA CATCCCTATT CGTACCTGGT
721TCCCCAAGGA AAATCTTTTC AGCTTCCAGA CAGCAACCAC AACTATGCAA GCGGTGTTCA
781GGGGCTACGC GGAGAGGAAG CGCCGGAAAC GGGAGAATGA TTCCGCGTCT GTAATCCAGA
841GGAACTTCCG CAAACACCTG CGCATGGTCG GCAGCCGGAG GGTGAAGGCC CAGACGTTCG
901CTGAGCGGCG CGAGCGGAGC TTCAGCCGGT CCTGGAGCGA CCCCACCCCC ATGAAAGCCG
961ACACTTCCCA CGACTCCCGA GACAGCAGTG ACCTGCAGAG CTCCCACTGC ACGCTGGACG
1021AGGCCTTCGA GGACCTGGAC TGGGACACTG AGAAGGGCCT GGAGGCTGTG GCCTGCGACA
1081CCGAAGGCTT CGTGCCACCA AAGGTCATGC TCATTTCCTC CAAGGTGCCC AAGGCTGAGT
1141ACATCCCCAC TATCATCCGC CGGGATGACC CCTCCATCAT CCCCATCCTC TACGACCATG
1201AGCACGCAAC CTTCGAGGAC ATCCTTGAGG AGATAGAGAG GAAGCTGAAC GTCTACCACA
1261AGGGAGCCAA GATCTGGAAA ATGCTGATTT TCTGCCAGGG AGGTCCTGGA CACCTCTATC
1321TCCTCAAGAA CAAGGTGGCC ACCTTTGCCA AAGTGGAGAA GGAAGAGGAC ATGATTCACT
1381TCTGGAAGCG GCTGAGCCGC CTGATGAGCA AAGTGAACCC AGAGCCGAAC GTCATCCACA
1441TCATGGGCTG CTACATTCTG GGGAACCCCA ATGGAGAGAA GCTGTTCCAG AACCTCAGGA
1501CCCTCATGAC TCCTTATAGG GTCACCTTCG AGTCACCCCT GGAGCTCTCA GCCCAAGGGA
1561AGCAGATGAT CGAGACGTAC TTTGACTTCC GGTTGTATCG CCTGTGGAAG AGCCGCCAGC
1621ACTCGAAGCT GCTGGACTTT GACGACGTCC TGTTGCCAAC TTTCTTGTAC AAAGTTGGca
1681ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)