Construct: ORF ccsbBroadEn_06818
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001873.1_s300c1, BRDN0000391382
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTPRH (5794)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5794 | PTPRH | protein tyrosine phosphatas... | NM_002842.5 | 99.8% | 99.9% | (many diffs) |
| 2 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_011527183.1 | 99.2% | 99.2% | (many diffs) |
| 3 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_017027058.1 | 97.8% | 97.2% | (many diffs) |
| 4 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_017027056.1 | 97.2% | 96.6% | (many diffs) |
| 5 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_017027057.1 | 96.8% | 96.3% | (many diffs) |
| 6 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_017027059.1 | 95.8% | 95.2% | (many diffs) |
| 7 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_017027060.1 | 95.8% | 95.2% | (many diffs) |
| 8 | human | 5794 | PTPRH | protein tyrosine phosphatas... | NM_001161440.3 | 83.9% | 83.9% | 344_345ins534;508C>T;1384T>C |
| 9 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XR_001753730.1 | 83.7% | (many diffs) | |
| 10 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_011527188.1 | 83.1% | 83.1% | (many diffs) |
| 11 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_017027062.1 | 83.1% | 83.1% | (many diffs) |
| 12 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_017027063.1 | 83.1% | 83.1% | (many diffs) |
| 13 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_017027061.1 | 81.6% | 81.1% | (many diffs) |
| 14 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XR_001753731.1 | 69.1% | (many diffs) | |
| 15 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_011527190.1 | 67.9% | 67.2% | (many diffs) |
| 16 | human | 5794 | PTPRH | protein tyrosine phosphatas... | XM_017027064.1 | 66.3% | 65.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3414
- ORF length:
- 3345
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTGGGGCT GGCGGGGGCC TCGGGGTCTG GGGGAACCTG GTGCTGCTGG 121 GCCTGTGCAG CTGGACAGGG GCCAGGGCGC CTGCCCCCAA CCCAGGGAGG AACCTGACAG 181 TGGAGACTCA GACCACCAGC TCCATCTCCC TGAGCTGGGA GGTCCCCGAT GGCCTAGACT 241 CACAGAACTC CAACTACTGG GTTCAGTGTA CTGGAGACGG CGGCACAACA GAGACTCGAA 301 ACACAACAGC CACCAACGTC ACCGTGGATG GCCTTGGACC CGGGTCATTG TATACGTGTT 361 CTGTGTGGGT GGAGAAAGAC GGAGTAAATA GCTCTGTGGG GACTGTCACT ACTGCCACAG 421 CTCCCAACCC AGTGAGGAAC CTGAGAGTGG AGGCTCAGAC CAACAGCTCC ATCGCCCTGA 481 CCTGGGAGGT CCCCGACGGC CCAGACCCAC AGAACTCCAC CTACGGGGTT GAGTACACTG 541 GAGATGGTGG CAGAGCAGGG ACTCGAAGCA CAGCACACAC CAACATCACC GTGGATGGAC 601 TTGAACCCGG GTGTTTGTAT GCGTTTTCCA TGTGGGTGGG AAAGAATGGA ATCAACAGCT 661 CCCGGGAGAC TCGAAATGCC ACCACAGCTC ACAACCCAGT GAGGAACCTG AGAGTGGAGG 721 CTCAGACCAC CAGCTCCATC TCCCTGAGCT GGGAGGTCCC CGATGGCACA GACCCACAGA 781 ACTCCACCTA CTGCGTTCAG TGCACTGGAG ATGGTGGCAG AACAGAGACT CGAAACACAA 841 CAGACACCAG AGTCACCGTG GATGGCCTTG GACCCGGGTC ATTGTATACG TGTTCTGTGT 901 GGGTGGAGAA AGACGGAGTA AATAGCTCTG TGGAGATTGT CACTAGTGCC ACAGCTCCCA 961 ACCCAGTGAG AAACCTGACA GTGGAGGCTC AGACCAACAG CTCCATCGCC CTGACCTGGG 1021 AGGTCCCCGA TGGCCCAGAC CCACAGAACT CCACCTACGG GGTTGAGTAC ACTGGAGATG 1081 GTGGCAGAGC AGGGACTCGA AGCACAGCAT ACACCAACAT CACCGTGGAT AGACTTGAAC 1141 CCGGGTGTTT GTATGTGTTT TCCGTGTGGG TGGGGAAGAA TGGAATCAAC AGCTCCCGGG 1201 AGACTCGAAA TGCCACCACA GCCCCCAACC CAGTGAGAAA CCTCCATATG GAGACTCAGA 1261 CCAACAGCTC CATCGCCCTA TGCTGGGAAG TCCCCGATGG CCCATACCCT CAGGACTACA 1321 CCTACTGGGT AGAGTACACT GGAGACGGTG GTGGCACAGA GACCCGAAAC ACAACAAATA 1381 CCAGTGTGAC AGCTGAGAGA CTTGAGCCCG GAACCTTGTA CACATTCTCT GTATGGGCAG 1441 AAAAAAATGG AGCACGTGGC TCCAGGCAGA ATGTCAGCAT CTCCACAGTC CCCAACGCAG 1501 TGACAAGCCT CAGCAAGCAG GACTGGACCA ACAGCACCAT TGCTTTGCGC TGGACAGCTC 1561 CCCAGGGCCC AGGCCAGTCT TCCTACAGCT ACTGGGTCTC ATGGGTCAGG GAAGGCATGA 1621 CTGACCCCAG GACCCAAAGC ACCTCAGGTA CTGACATCAC CCTAAAGGAA CTGGAAGCTG 1681 GCAGCCTGTA CCACCTCACC GTCTGGGCCG AGAGGAATGA GGTCAGAGGC TATAACAGCA 1741 CCCTCACTGC AGCCACTGCT CCCAATGAGG TCACAGATCT CCAGAATGAA ACTCAGACTA 1801 AGAACTCAGT CATGCTGTGG TGGAAGGCCC CTGGAGACCC CCACTCTCAG TTGTACGTAT 1861 ACTGGGTCCA GTGGGCCAGC AAGGGACATC CCCGGAGGGG GCAAGATCCC CAAGCGAATT 1921 GGGTCAACCA GACCAGCAGG ACCAATGAGA CGTGGTACAA AGTGGAGGCC CTGGAACCCG 1981 GGACGCTGTA CAATTTCACC GTGTGGGCAG AGAGGAATGA CGTAGCCAGT TCCACGCAGA 2041 GCCTCTGTGC GTCCACATAC CCAGACACAG TCACCATCAC TTCCTGTGTC AGCACCTCAG 2101 CGGGCTATGG AGTCAACTTG ATCTGGTCCT GCCCCCAGGG AGGCTACGAG GCCTTTGAGT 2161 TGGAGGTGGG AGGACAGCGG GGCTCCCAGG ACAGATCTTC ATGTGGGGAG GCTGTGTCTG 2221 TGTTGGGTCT CGGGCCGGCT CGGTCCTACC CAGCCACCAT CACGACCATC TGGGACGGAA 2281 TGAAGGTCGT GTCTCACTCT GTGGTCTGCC ACACCGAGAG TGCAGGGGTC ATTGCCGGAG 2341 CCTTTGTGGG CATCCTCCTG TTTCTCATCC TCGTGGGCCT GCTGATTTTC TTCCTGAAGA 2401 GGAGGAATAA GAAGAAGCAG CAGAAACCAG AACTCAGGGA TCTGGTCTTT AGCTCCCCAG 2461 GGGACATCCC AGCTGAAGAC TTCGCTGACC ACGTCAGGAA GAATGAGAGG GACAGCAACT 2521 GTGGTTTTGC AGACGAGTAC CAGCAACTCT CCCTGGTGGG CCACAGCCAG TCTCAGATGG 2581 TGGCTTCGGC TTCAGAGAAC AACGCCAAGA ACCGCTACAG AAATGTGCTG CCCTATGACT 2641 GGTCCCGGGT GCCCCTGAAG CCCATCCATG AGGAGCCAGG CTCTGACTAC ATCAATGCCA 2701 GCTTCATGCC CGGTCTCTGG AGCCCCCAGG AGTTCATTGC AACCCAGGGT CCCCTGCCAC 2761 AGACAGTGGG TGACTTCTGG CGCCTGGTGT GGGAACAGCA GAGCCACACC CTGGTCATGC 2821 TGACCAACTG CATGGAGGCC GGCCGGGTGA AGTGTGAGCA TTACTGGCCT CTGGACTCGC 2881 AGCCCTGCAC CCATGGGCAC CTGCGGGTAA CCCTGGTAGG TGAGGAAGTG ATGGAGAACT 2941 GGACGGTGCG GGAACTGCTG CTCCTCCAGG TGGAGGAGCA GAAGACACTG TCTGTGCGCC 3001 AATTCCACTA CCAGGCCTGG CCGGATCACG GCGTTCCCTC CTCCCCAGAC ACCTTGCTGG 3061 CTTTCTGGAG GATGCTTCGG CAGTGGCTGG ATCAGACCAT GGAGGGAGGC CCACCCATTG 3121 TGCACTGCAG TGCTGGCGTG GGTCGCACAG GAACCCTCAT TGCCCTGGAC GTCCTGCTCC 3181 GGCAGCTGCA GTCCGAGGGT CTCCTTGGGC CCTTCAGCTT TGTAAGGAAG ATGAGAGAGA 3241 GTCGGCCGTT GATGGTGCAG ACTGAGGCTC AGTACGTATT CCTGCATCAG TGCATCCTGC 3301 GGTTCCTCCA ACAGTCAGCC CAGGCCCCAG CCGAGAAGGA AGTCCCGTAT GAGGATGTCG 3361 AAAACCTCAT CTACGAGAAC GTGGCCGCCA TCCAGGCCCA CAAGTTGGAG GTCTTGCCAA 3421 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac