Construct: ORF ccsbBroadEn_08967
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013321.1_s300c1, BRDN0000395239
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CFAP69 (79846)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79846 | CFAP69 | cilia and flagella associat... | NM_001039706.3 | 99.8% | 99.7% | 1116C>T;1468G>A;2562C>G |
| 2 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_011516578.2 | 99.6% | 99.5% | (many diffs) |
| 3 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_011516577.2 | 98% | 97.9% | (many diffs) |
| 4 | human | 79846 | CFAP69 | cilia and flagella associat... | NM_001160138.2 | 97.9% | 97.8% | (many diffs) |
| 5 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012626.1 | 96.2% | 96.1% | 1116C>T;1468G>A;2549_2550ins105 |
| 6 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012624.1 | 96.1% | 96% | (many diffs) |
| 7 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012627.1 | 95% | 94.8% | (many diffs) |
| 8 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012625.1 | 94.4% | 94.3% | (many diffs) |
| 9 | human | 79846 | CFAP69 | cilia and flagella associat... | NM_001363438.1 | 92.8% | 92.7% | (many diffs) |
| 10 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012628.1 | 91.1% | 91% | (many diffs) |
| 11 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012629.1 | 90.4% | 85.6% | (many diffs) |
| 12 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012631.1 | 87.9% | 86% | (many diffs) |
| 13 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012632.1 | 87.5% | 87.4% | (many diffs) |
| 14 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012633.2 | 82.6% | 82.5% | (many diffs) |
| 15 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012634.1 | 82.6% | 82.5% | (many diffs) |
| 16 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012635.2 | 82.6% | 82.5% | (many diffs) |
| 17 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012636.1 | 82.6% | 82.5% | (many diffs) |
| 18 | human | 79846 | CFAP69 | cilia and flagella associat... | XR_927532.1 | 82.3% | (many diffs) | |
| 19 | human | 79846 | CFAP69 | cilia and flagella associat... | XR_927533.1 | 82.1% | (many diffs) | |
| 20 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012637.1 | 80.8% | 80.7% | (many diffs) |
| 21 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012638.1 | 80.8% | 80.7% | (many diffs) |
| 22 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012639.1 | 76% | 75.9% | (many diffs) |
| 23 | human | 79846 | CFAP69 | cilia and flagella associat... | XR_927530.1 | 70.6% | (many diffs) | |
| 24 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012641.1 | 67.5% | 65.5% | (many diffs) |
| 25 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012640.1 | 67% | 66.9% | (many diffs) |
| 26 | human | 79846 | CFAP69 | cilia and flagella associat... | XR_927531.2 | 65% | (many diffs) | |
| 27 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_011516579.1 | 58.9% | 58.4% | (many diffs) |
| 28 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_005250600.3 | 58.6% | 58.5% | (many diffs) |
| 29 | human | 79846 | CFAP69 | cilia and flagella associat... | XM_017012642.1 | 49.3% | 48.6% | (many diffs) |
| 30 | human | 79846 | CFAP69 | cilia and flagella associat... | XR_001744876.1 | 41.7% | (many diffs) | |
| 31 | mouse | 207686 | Cfap69 | cilia and flagella associat... | NM_172447.2 | 84.4% | 83.9% | (many diffs) |
| 32 | mouse | 207686 | Cfap69 | cilia and flagella associat... | XM_006503560.3 | 81.2% | 81.5% | (many diffs) |
| 33 | mouse | 207686 | Cfap69 | cilia and flagella associat... | XM_006503561.2 | 78.9% | 78.6% | (many diffs) |
| 34 | mouse | 207686 | Cfap69 | cilia and flagella associat... | XM_006503562.3 | 71.8% | 73.1% | (many diffs) |
| 35 | mouse | 207686 | Cfap69 | cilia and flagella associat... | XM_011240666.1 | 71.8% | 73.1% | (many diffs) |
| 36 | mouse | 207686 | Cfap69 | cilia and flagella associat... | XM_006503563.2 | 63.2% | 61.7% | (many diffs) |
| 37 | mouse | 207686 | Cfap69 | cilia and flagella associat... | XM_006503564.1 | 63.2% | 61.7% | (many diffs) |
| 38 | mouse | 207686 | Cfap69 | cilia and flagella associat... | XM_011240667.2 | 54.4% | 54.1% | (many diffs) |
| 39 | mouse | 207686 | Cfap69 | cilia and flagella associat... | XR_001784646.1 | 46.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2892
- ORF length:
- 2823
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTGGACAGAG GAAGCCGGGG CGACCGCCGA GGCCCAGGAA TCCGGCATCA 121 GGAACAAGTC TAGCAGTTCC AGTCAAATCC CGGTGGTTGG GGTGGTGACG GAGGACGATG 181 AGGCGCAGGA TGTTTTCAAG CCTATGGACC TTAATCGTGT CATCAAACTC CTCGAAGAGA 241 CTGATAAAGA TGGCTTGGAA GAAAAACAAC TTAAATTTGT CAAGAAACTG GTACAGTGTT 301 ATCAGAATGG ACTTCCATTA AGGGATTTAG CACAGATATT TAAAATTCTG AATCTGTGTT 361 CAGGAAAAAT AAAAAACCAG CCTCGTTTTA TAGAATCTGC ATATGATATC ATAAAACTGT 421 GTGGCTTGCC ATTTTTGAAA AAGAAAGTGT CGGATGAAAT AACTTATGCT GAAGATACTG 481 CTAATTCAAT TGCACTTCTG GGTGACTTAA TGAAAATACC AAGTTCTGAA TTGAGGATAC 541 AAATTTGTAA GTGTATTGTT GATTTTTATC ATGCAGAACC ACCAAAGAAG CATATTCCAG 601 GTTACCAGCA AGCGAGTTCA TCATACAAGA TTCAAATGGC TGAAGTTGGA GGATTAGCAA 661 AAACAATGGT CCAGTCAATG ACCTTGCTTG AAAATCAACT TGTTGAGAAA CTTTGGGTAC 721 TTAAAGTTCT GCAGCATCTC TCAACTTCTG AAGTTAATTG TACTATAATG ATGAAAGCAC 781 AAGCAGCCAG TGGAATCTGT ACTCACCTCA ATGACCCAGA TCCCTCTGGA CAGCTTTTAT 841 TTCGTTCATC AGAAATACTT TGGAACTTGC TGGAAAAATC TTCAAAAGAA GAAGTCATAC 901 AACAGCTTAG TAACTTGGAA TGTTTGCTGG CTTTGAAGGA AGTATTTAAA AATCTGTTTA 961 TGAGAGGTTT CAGTCATTAT GACCGTCAGC TTAGAAATGA CATATTAGTG ATCACTACAA 1021 TTATAGCTCA AAATCCTGAA GCACCAATGA TTGAATGTGG CTTTACCAAG GATTTGATAC 1081 TGTTTGCCAC CTTTAATGAA GTTAAAAGTC AAAATCTTTT GGTAAAAGGA CTTAAGCTTT 1141 CTAATTCCTA TGAAGATTTT GAGTTGAAGA AATTACTATT CAATGTAATT GTGATCTTAT 1201 GTAAAGATTT ACCTACTGTA CAGCTATTAA TTGATGGCAA AGTTATTTTG GCTTTGTTTA 1261 CCTATGTTAA GAAGCCTGAG AAGCAAAAAA TAATTGACTG GTCTGCAGCA CAGCATGAAG 1321 AATTACAACT GCATGCAATT GCCACTTTGT CATCAGTGGC TCCTTTATTA ATAGAAGAAT 1381 ACATGTCATG CCAGGGAAAT GCTCGAGTCC TTGCATTTCT AGAATGGTGT GAGAGTGAAG 1441 ATCCGTTTTT CAGTCATGGT AACAGTTTTC ATGGTACAGG TGGCCGAGGC AACAAGTTTG 1501 CCCAGATGCG TTACAGTTTA AGACTCCTGA GAGCCATGGT CTACCTTGAA GATGAGACTG 1561 TAAACAAAGA TCTTTGTGAA AAGGGAACAA TTCAGCAAAT GATAGGAATC TTTAAAAATA 1621 TAATAAGCAA GCCTAATGAA AAGGAAGAAG CCATTGTTTT GGAAATCCAG TCTGATATAT 1681 TACTTATCCT ATCTGGCCTT TGTGAGAATC ACATTCAAAG GAAGGAAATT TTCGGAACTG 1741 AAGGAGTAGA TATCGTTCTT CATGTGATGA AAACAGACCC CAGGAAGTTA CAGAGTGGCT 1801 TAGGCTATAA TGTACTTCTT TTTAGTACAT TGGACAGCAT TTGGTGCTGT ATTTTGGGAT 1861 GTTATCCCTC AGAGGATTAT TTTCTTGAAA AGGAAGGCAT TTTTCTCCTT TTGGATTTGT 1921 TAGCATTGAA CCAAAAAAAA TTCTGTAATC TAATACTTGG AATAATGGTT GAATTTTGTG 1981 ATAATCCCAA AACTGCAGCT CATGTCAATG CTTGGCAAGG GAAGAAGGAT CAGACAGCTG 2041 CTAGTCTTTT AATTAAATTG TGGAGAAAGG AGGAAAAAGA ACTAGGAGTA AAACGTGATA 2101 AAAATGGGAA GATCATTGAT ACAAAAAAAC CTCTATTTAC TAGCTTTCAA GAAGAGCAAA 2161 AAATCATCCC ACTGCCTGCT AACTGCCCAT CTATTGCGGT TATGGATGTT TCTGAGAATA 2221 TTAGAGCAAA AATTTATGCT ATATTGGGCA AACTAGATTT TGAAAATTTA CCTGGCCTAT 2281 CTGCTGAAGA TTTTGTCACC CTTTGTATCA TACATAGATA TCTTGATTTT AAAATTGGAG 2341 AAATATGGAA TGAAATATAT GAAGAAATAA AATTAGAAAA ATTAAGACCA GTCACTACAG 2401 ATAAAAAAGC TTTGGAAGCT ATTACAACAG CATCAGAAAA TATTGGAAAG ATGGTTGCTT 2461 CTCTGCAAAG TGATATAATT GAAAGCCAAG CATGCCAAGA CATGCAAAAT GAACAAAAAG 2521 TATATGCAAA AATACAGGCC ACGCACAAGC AAAGAGAGCT GGCTAATAAA TCATGGGAAG 2581 ATTTCTTGGC TAGAACATCA AACGCTAAAA CGTTAAAGAA AGCAAAAAGG CTTCAAGAAA 2641 AAGCTATAGA AGCCTCCAGA TACCATAAAC GACCACAAAA TGCAATATTT CACCAAACAC 2701 ATATTAAAGG CCTTAACACA ACGGTGCCCT CTGGTGGAGT AGTAACAGTG GAAAGCACTC 2761 CTGCCCGATT AGTAGGAGGA CCTCTGGTTG ATACGGATAT TGCTCTTAAA AAACTGCCCA 2821 TTCGAGGAGG AGCCTTGCAG AGGGTGAAAG CAGTTAAAAT TGTGGATGCA CCAAAAAAGA 2881 GTATTCCTAC GTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 2941 caatttgttg caacgaac