Construct: ORF ccsbBroadEn_09655
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004927.1_s300c1, BRDN0000394800
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF98 (148198)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57615 | ZNF492 | zinc finger protein 492 | NM_020855.3 | 99% | 97.7% | (many diffs) |
| 2 | human | 148198 | ZNF98 | zinc finger protein 98 | NM_001098626.2 | 92.6% | 92.6% | (many diffs) |
| 3 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_017026116.1 | 79.2% | 70.4% | (many diffs) |
| 4 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_152626.4 | 75.8% | 64.3% | (many diffs) |
| 5 | human | 100129842 | ZNF737 | zinc finger protein 737 | NM_001159293.2 | 74.8% | 66.4% | (many diffs) |
| 6 | human | 646864 | ZNF723 | zinc finger protein 723 | NM_001349726.2 | 73.7% | 64.4% | (many diffs) |
| 7 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451652.1 | 73.7% | 64.4% | (many diffs) |
| 8 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355406.2 | 73.5% | 63.9% | (many diffs) |
| 9 | human | 80264 | ZNF430 | zinc finger protein 430 | NM_001172671.2 | 73.3% | 62.9% | (many diffs) |
| 10 | human | 80264 | ZNF430 | zinc finger protein 430 | NM_025189.4 | 73.1% | 62.8% | (many diffs) |
| 11 | human | 100129543 | ZNF730 | zinc finger protein 730 | NM_001277403.2 | 72.8% | 63.7% | (many diffs) |
| 12 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355404.2 | 72.8% | 63.3% | (many diffs) |
| 13 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278661.1 | 71.8% | 64% | (many diffs) |
| 14 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278662.2 | 71.8% | 64% | (many diffs) |
| 15 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278677.2 | 71.8% | 64% | (many diffs) |
| 16 | human | 9534 | ZNF254 | zinc finger protein 254 | XM_011528443.1 | 71.8% | 64% | (many diffs) |
| 17 | human | 9534 | ZNF254 | zinc finger protein 254 | XM_011528444.2 | 71.8% | 64% | (many diffs) |
| 18 | human | 9534 | ZNF254 | zinc finger protein 254 | XM_017027515.1 | 71.8% | 64% | (many diffs) |
| 19 | human | 100129543 | ZNF730 | zinc finger protein 730 | XM_017026115.2 | 71.7% | 62.7% | (many diffs) |
| 20 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355405.2 | 71.6% | 61.6% | (many diffs) |
| 21 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451520.1 | 71.6% | 61.6% | (many diffs) |
| 22 | human | 100129543 | ZNF730 | zinc finger protein 730 | XM_017026114.1 | 71.4% | 62.5% | (many diffs) |
| 23 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351671.2 | 71% | 59.2% | (many diffs) |
| 24 | human | 148213 | ZNF681 | zinc finger protein 681 | NM_138286.3 | 70.2% | 60.6% | (many diffs) |
| 25 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351669.2 | 69.2% | 58.5% | (many diffs) |
| 26 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_173531.4 | 69.1% | 58.4% | (many diffs) |
| 27 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256648.2 | 56.4% | 48.6% | (many diffs) |
| 28 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256649.2 | 56.4% | 48.6% | (many diffs) |
| 29 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256650.2 | 56.4% | 48.6% | (many diffs) |
| 30 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528257.3 | 56.4% | 48.6% | (many diffs) |
| 31 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528259.3 | 56.4% | 48.6% | (many diffs) |
| 32 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027207.2 | 56.4% | 48.6% | (many diffs) |
| 33 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027208.2 | 56.4% | 48.6% | (many diffs) |
| 34 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027209.2 | 56.4% | 48.6% | (many diffs) |
| 35 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027210.2 | 56.4% | 48.6% | (many diffs) |
| 36 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027211.2 | 56.4% | 48.6% | (many diffs) |
| 37 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027212.2 | 56.4% | 48.6% | (many diffs) |
| 38 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027213.2 | 56.4% | 48.6% | (many diffs) |
| 39 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027214.2 | 56.4% | 48.6% | (many diffs) |
| 40 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027215.2 | 56.4% | 48.6% | (many diffs) |
| 41 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027216.2 | 56.4% | 48.6% | (many diffs) |
| 42 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_003423.4 | 55.9% | 48.3% | (many diffs) |
| 43 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256653.1 | 55.3% | 47.7% | (many diffs) |
| 44 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351672.2 | 53% | 45.1% | (many diffs) |
| 45 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355237.2 | 44.8% | 37% | (many diffs) |
| 46 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278665.2 | 7.6% | 6.8% | (many diffs) |
| 47 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 7.2% | 6.5% | (many diffs) |
| 48 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348689.2 | 6.9% | 6% | (many diffs) |
| 49 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355241.2 | 6.5% | 5.7% | (many diffs) |
| 50 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271637.2 | 4.9% | 2.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1662
- ORF length:
- 1593
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTAGAGAAC TACAGAAACC TGGTCTTCGT GGGTATTGCT GCCTCTAAGC 121 CAGACCTGAT CACCTGTCTG GAGCAAGGAA AAGAACCTTG GAATGTGAAG AGACATGAGA 181 TGGTAACTGA ACCCCCAGTT GTATATTCTT ATTTTGCCCA AGACCTTTGG CCAAAGCAGG 241 GCAAAAAAAA TTATTTCCAA AAAGTGATAC TGAGAACATA TAAAAAATGT GGACGTGAAA 301 ATTTACAGTT AAGAAAATAC TGTAAAAGCA TGGATGAGTG TAAGGTGCAC AAAGAATGTT 361 ACAATGGACT TAACCAGTGT TTGACAACTA CCCAGAACAA AATATTTCAA TATGACAAAT 421 ATGTGAAAGT CTTTCATAAA TTTTCAAATT CAAACAGACA TAAGATAGGA CATACTGGAA 481 AGAAATCTTT CAAATGTAAA GAATGTGAAA AGTCATTTTG CATGCTTTCA CACTTAGCTC 541 AACATAAAAG AATTCATAGT GGAGAGAAAC CCTACAAATG TAAAGAATGT GGGAAAGCCT 601 ATAATGAGGC CTCAAACCTT TCTACACATA AAAGAATTCA TACTGGAAAG AAACCCTACA 661 AATGCGAAGA GTGTGGAAAA GCCTTTAACC GGCTCTCACA CCTTACTACA CATAAGATAA 721 TTCATACTGG AAAGAAACCC TACAAATGTG AGGAGTGTGG CAAAGCTTTT AACCAATCTG 781 CAAACCTTAC TACACATAAG AGAATTCATA CTGGAGAGAA ACCCTACAAA TGTGAAGAAT 841 GTGGCAGAGC TTTTAGCCAG TCCTCAACCC TTACTGCACA TAAGATAATT CATGCTGGAG 901 AGAAACCTTA CAAATGTGAA GAATGTGGCA AAGCTTTTAG CCAGTCCTCA ACCCTTACTA 961 CACATAAGAT AATTCATACT GGAGAGAAAT TCTACAAATG TGAAGAATGT GGTAAGGCCT 1021 TTAGCCGGTT ATCCCACCTT ACTACACATA AGAGAATTCA TTCTGGAGAG AAACCCTACA 1081 AGTGTGAAGA ATGTGGCAAA GCTTTTAAAC AATCCTCAAC CCTTACTACA CATAAGAGAA 1141 TTCATGCTGG AGAGAAATTC TACGAATGTG AAGTATGTAG CAAAGCCTTT AGCCGGTTCT 1201 CACACCTTAC TACACATAAG AGAATTCATA CTGGAGAGAA GCCCTACAAA TGTGAAGAAT 1261 GTGGCAAAGC TTTTAACCTA TCATCACAAC TTACTACACA TAAGATAATT CATACTGGAG 1321 AGAAACCCTA CAAATGTGAA GAATGTGGCA AAGCTTTTAA CCAGTCCTCA ACTCTTTCTA 1381 AACATAAGGT AATTCATACT GGAGAGAAGC CCTACAAATG TGAAGAATGT GGCAAAGCTT 1441 TTAACCAGTC CTCACACCTT ACTACACATA AGATGATTCA TACTGGAGAG AAACCCTACA 1501 AGTGTGAAGA ATGCGGCAAA GCCTTTAACA ACTCCTCTAT TCTTAACAGA CATAAGATGA 1561 TTCATACTGG AGAGAAACTC TACAAACCTG AAAGTTGTAA CAATGCTTGT GACAACATTG 1621 CAAAGATTTC CAAATATAAA AGAAATTGTG CTGGTGAGAA ATTGCCAACT TTCTTGTACA 1681 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac