Transcript: Human NM_001098626.2

Homo sapiens zinc finger protein 98 (ZNF98), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
ZNF98 (148198)
Length:
2338
CDS:
123..1841

Additional Resources:

NCBI RefSeq record:
NM_001098626.2
NBCI Gene record:
ZNF98 (148198)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001098626.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236729 TATACTTGATGAGAACAAATG pLKO_005 1987 3UTR 100% 10.800 7.560 N ZNF98 n/a
2 TRCN0000236731 ACCTTACTACACATAAGATAA pLKO_005 877 CDS 100% 13.200 6.600 Y ZNF98 n/a
3 TRCN0000236730 CCCTTACTACACATAAGATAA pLKO_005 1129 CDS 100% 13.200 6.600 Y ZNF98 n/a
4 TRCN0000236732 CCCTTACTGCACATAAGATAA pLKO_005 1045 CDS 100% 13.200 6.600 Y ZNF98 n/a
5 TRCN0000243748 CTGGAAAGAAACCCTACAAAT pLKO_005 820 CDS 100% 13.200 6.600 Y Gm6871 n/a
6 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 988 CDS 100% 13.200 6.600 Y Zfp934 n/a
7 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 988 CDS 100% 13.200 6.600 Y 2810408B13Rik n/a
8 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 988 CDS 100% 13.200 6.600 Y EG668616 n/a
9 TRCN0000236733 TCACACTTAGCTCAACATAAA pLKO_005 705 CDS 100% 13.200 6.600 Y ZNF98 n/a
10 TRCN0000149130 GCTGGAGAGAAACCTTACAAA pLKO.1 1071 CDS 100% 5.625 2.813 Y ZNF761 n/a
11 TRCN0000016516 CCCTTACTACACATAAGAGAA pLKO.1 1297 CDS 100% 4.950 2.475 Y ZNF117 n/a
12 TRCN0000018502 GATGTTAGAGAACTACAGAAA pLKO.1 245 CDS 100% 4.950 2.475 Y ZNF493 n/a
13 TRCN0000158848 GAGAAACCTTACAAATGTGAT pLKO.1 1077 CDS 100% 4.950 2.475 Y ZNF28 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001098626.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09655 pDONR223 100% 92.6% 92.6% None (many diffs) n/a
2 ccsbBroad304_09655 pLX_304 0% 92.6% 92.6% V5 (many diffs) n/a
3 TRCN0000468487 GAACACCAGATCGGTGGCCCTCAA pLX_317 20.1% 92.6% 92.6% V5 (many diffs) n/a
4 ccsbBroadEn_15167 pDONR223 53.6% 78.9% 33.6% None (many diffs) n/a
5 ccsbBroad304_15167 pLX_304 0% 78.9% 33.6% V5 (not translated due to prior stop codon) (many diffs) n/a
6 ccsbBroadEn_15273 pDONR223 50.9% 74.7% 63.5% None (many diffs) n/a
7 ccsbBroad304_15273 pLX_304 0% 74.7% 63.5% V5 (many diffs) n/a
8 TRCN0000472761 GCGGTTCAATGTTGTAGTCTTGTG pLX_317 63.8% 34.1% 28.9% V5 (not translated due to frame shift) (many diffs) n/a
9 ccsbBroadEn_02188 pDONR223 100% 73% 65.5% None (many diffs) n/a
10 ccsbBroad304_02188 pLX_304 0% 73% 65.5% V5 (many diffs) n/a
11 TRCN0000476436 TCCGTGTTGGTCAAGCGACGCGCC pLX_317 12.5% 73% 65.5% V5 (many diffs) n/a
12 ccsbBroadEn_08635 pDONR223 100% 73% 62.1% None (many diffs) n/a
13 ccsbBroad304_08635 pLX_304 0% 73% 62.1% V5 (many diffs) n/a
14 TRCN0000469248 TACCCGCTTGGCTTTAAAAACCAA pLX_317 37.7% 57.9% 48% V5 (many diffs) n/a
15 ccsbBroadEn_07157 pDONR223 100% 58.8% 51.2% None (many diffs) n/a
16 ccsbBroad304_07157 pLX_304 0% 58.8% 51.2% V5 (many diffs) n/a
17 TRCN0000475452 TAAAACTTCAACTTGGTTTCCTTC pLX_317 10.2% 58.8% 51.2% V5 (many diffs) n/a
18 ccsbBroadEn_11384 pDONR223 100% 14.1% 12.9% None (many diffs) n/a
19 ccsbBroad304_11384 pLX_304 0% 14.1% 12.9% V5 (many diffs) n/a
20 TRCN0000470576 TACATACAGACCTACACGTAGACC pLX_317 100% 14.1% 12.9% V5 (many diffs) n/a
21 ccsbBroadEn_15729 pDONR223 0% 12.6% 11.3% None (many diffs) n/a
22 ccsbBroad304_15729 pLX_304 0% 12.6% 11.3% V5 (many diffs) n/a
23 TRCN0000470492 GCCGACTTGCTCCATGATGCAGCT pLX_317 100% 12.6% 11.3% V5 (many diffs) n/a
24 ccsbBroadEn_13746 pDONR223 100% 12% 11% None (many diffs) n/a
25 ccsbBroad304_13746 pLX_304 0% 12% 11% V5 (many diffs) n/a
26 TRCN0000475669 ATTCGCAGCGAGTTTGTCCGCCGC pLX_317 100% 12% 11% V5 (many diffs) n/a
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