Construct: ORF ccsbBroadEn_11047

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003468.1_s300c1, BRDN0000397049
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
POU2F2 (5452)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5452 POU2F2 POU class 2 homeobox 2 NM_001247994.2 100% 100%
2 human 5452 POU2F2 POU class 2 homeobox 2 NM_002698.5 86.3% 83.3% 1145_1280del;1337_1389del
3 human 5452 POU2F2 POU class 2 homeobox 2 NM_001207026.1 85.6% 82.6% 499_546del;1193_1328del;1385_1401del
4 human 5452 POU2F2 POU class 2 homeobox 2 NM_001207025.3 83.5% 80.5% 499_546del;1193_1328del;1385_1437del
5 human 5452 POU2F2 POU class 2 homeobox 2 XM_011527042.3 82.4% 79.5% 185_250del;1211_1346del;1403_1455del
6 human 5452 POU2F2 POU class 2 homeobox 2 XM_011527041.3 79.8% 77% (many diffs)
7 human 5452 POU2F2 POU class 2 homeobox 2 XM_011527043.3 74.4% 74.4% 185_250del;369_665del;862_909del
8 human 5452 POU2F2 POU class 2 homeobox 2 XM_005259010.4 68.2% 65.8% 1145_1280del;1337_1758del
9 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026896.2 66.6% 64.3% (many diffs)
10 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026894.2 66.4% 64.1% 499_546del;1193_1328del;1385_1806del
11 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026893.2 65.7% 63.4% 185_250del;1211_1346del;1403_1824del
12 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026895.2 65.6% 62.6% (many diffs)
13 human 5452 POU2F2 POU class 2 homeobox 2 XM_011527040.3 64.1% 61.8% (many diffs)
14 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026892.2 57% 55% (many diffs)
15 human 5452 POU2F2 POU class 2 homeobox 2 XM_024451547.1 56.6% 54.5% (many diffs)
16 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026891.2 56.5% 54.5% (many diffs)
17 human 5452 POU2F2 POU class 2 homeobox 2 XM_024451546.1 55.3% 53.3% (many diffs)
18 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026884.2 55.3% 53.3% (many diffs)
19 human 5452 POU2F2 POU class 2 homeobox 2 XM_024451545.1 54.8% 52.8% (many diffs)
20 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026885.2 54.6% 52.2% (many diffs)
21 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026886.2 53.6% 51.7% (many diffs)
22 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026887.2 53.6% 51.7% (many diffs)
23 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026888.2 53.6% 51.7% (many diffs)
24 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026889.2 53.6% 51.7% (many diffs)
25 human 5452 POU2F2 POU class 2 homeobox 2 XM_017026890.2 53.6% 51.7% (many diffs)
26 human 5452 POU2F2 POU class 2 homeobox 2 XR_001753710.2 17.5% 1_79del;1280_6848del
27 human 5452 POU2F2 POU class 2 homeobox 2 XR_001753709.2 16.5% (many diffs)
28 mouse 18987 Pou2f2 POU domain, class 2, transc... NM_001163556.1 81.5% 82% (many diffs)
29 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539662.3 80% 79.8% (many diffs)
30 mouse 18987 Pou2f2 POU domain, class 2, transc... NM_011138.2 78.8% 79.3% (many diffs)
31 mouse 18987 Pou2f2 POU domain, class 2, transc... NM_001163555.1 77.8% 78.3% (many diffs)
32 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539661.2 77.3% 77.1% (many diffs)
33 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539660.3 76.4% 76.2% (many diffs)
34 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539659.2 68.7% 69.2% (many diffs)
35 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539658.3 67.5% 67.3% (many diffs)
36 mouse 18987 Pou2f2 POU domain, class 2, transc... NM_001163554.1 64.7% 65.1% (many diffs)
37 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539656.3 63.6% 63.4% (many diffs)
38 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539655.3 62.5% 62.3% (many diffs)
39 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539654.3 61.9% 61.7% (many diffs)
40 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539653.3 59.8% 59.6% (many diffs)
41 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539652.3 53.7% 53.5% (many diffs)
42 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539651.3 53.2% 53% (many diffs)
43 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539648.2 52.8% 53.2% (many diffs)
44 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539647.3 52% 51.8% (many diffs)
45 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539649.3 51.2% 51.5% (many diffs)
46 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_006539650.3 51.2% 51.5% (many diffs)
47 mouse 18987 Pou2f2 POU domain, class 2, transc... XM_011250457.2 51.2% 51.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1266
ORF length:
1200
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT TCACTCCAGC ATGGGGGCTC CAGAAATAAG AATGTCTAAG CCCCTGGAGG
121CCGAGAAGCA AGGTCTGGAC TCCCCATCAG AGCACACAGA CACCGAAAGA AATGGACCAG
181ACACTAATCA TCAGAACCCC CAAAATAAGA CCTCCCCATT CTCCGTGTCC CCAACTGGCC
241CCAGTACAAA GATCAAGGCT GAAGACCCCA GTGGCGATTC AGCCCCAGCA GCACCCCTGC
301CCCCTCAGCC GGCCCAGCCT CATCTGCCCC AGGCCCAACT CATGTTGACG GGCAGCCAGC
361TAGCTGGGGA CATACAGCAG CTCCTCCAGC TCCAGCAGCT GGTGCTTGTG CCAGGCCACC
421ACCTCCAGCC ACCTGCTCAG TTCCTGCTAC CGCAGGCCCA GCAGAGCCAG CCAGGCCTGC
481TACCGACACC AAATCTATTC CAGCTACCTC AGCAAACCCA GGGAGCTCTT CTGACCTCCC
541AGCCCCGGGC CGGGCTTCCC ACACAGCCCC CCAAATGCTT GGAGCCACCA TCCCACCCCG
601AGGAGCCCAG TGATCTGGAG GAGCTGGAGC AATTCGCCCG CACCTTCAAG CAACGCCGCA
661TCAAGCTGGG CTTCACGCAG GGTGATGTGG GCCTGGCCAT GGGCAAGCTC TACGGCAACG
721ACTTCAGCCA GACGACCATT TCCCGCTTCG AGGCCCTCAA CCTGAGCTTC AAGAACATGT
781GCAAACTCAA GCCCCTCCTG GAGAAGTGGC TCAACGATGC AGAGACTATG TCTGTGGACT
841CAAGCCTGCC CAGCCCCAAC CAGCTGAGCA GCCCCAGCCT GGGTTTCGAC GGCCTGCCCG
901GCCGGAGACG CAAGAAGAGG ACCAGCATCG AGACAAACGT CCGCTTCGCC TTAGAGAAGA
961GTTTTCTAGC GAACCAGAAG CCTACCTCAG AGGAGATCCT GCTGATCGCC GAGCAGCTGC
1021ACATGGAGAA GGAAGTGATC CGCGTCTGGT TCTGCAACCG GCGCCAGAAG GAGAAACGCA
1081TCAACCCCTG CAGTGCGGCC CCCATGCTGC CCAGCCCAGG GAAGCCGGCC AGCTACAGCC
1141CCCATATGGT CACACCCCAA GGGGGCGCGG GGACCTTACC GTTGTCCCAA GCTTCCAGCA
1201GTCTGAGCAC AACAGCACAA ACCCCAGCCC TCAAGGCAGC CACTCGGCTA TCGGCTTGTC
1261AGGCCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1321gttgcaacga ac

Download FASTA (ORF) (Full)