Construct: ORF ccsbBroadEn_13889
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010341.1_s300c1, BRDN0000456944
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- KIR3DS1 (3813)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001083539.2 | 99.6% | 74% | (many diffs) |
| 2 | human | 112268355 | LOC112268355 | killer cell immunoglobulin-... | NM_001368254.1 | 99.6% | 74% | (many diffs) |
| 3 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_013289.2 | 84.3% | 62.3% | (many diffs) |
| 4 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_001322168.1 | 84.1% | 61.7% | (many diffs) |
| 5 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_017026784.2 | 82.2% | 69.8% | (many diffs) |
| 6 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_011526940.3 | 80.3% | 57% | (many diffs) |
| 7 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_006737.4 | 77.4% | 52.7% | (many diffs) |
| 8 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282170.1 | 74.8% | 49.2% | (many diffs) |
| 9 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_001242867.2 | 73.8% | 54.7% | (many diffs) |
| 10 | human | 115653 | KIR3DL3 | killer cell immunoglobulin ... | NM_153443.4 | 73.2% | 50.4% | (many diffs) |
| 11 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | XM_017030274.1 | 73.1% | 53.6% | (many diffs) |
| 12 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282171.1 | 69.3% | 43.6% | (many diffs) |
| 13 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_012312.4 | 66.5% | 38% | (many diffs) |
| 14 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | XM_017030275.2 | 66.5% | 38% | (many diffs) |
| 15 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | NM_014512.1 | 65.5% | 37.1% | (many diffs) |
| 16 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_011547998.2 | 65.5% | 37.1% | (many diffs) |
| 17 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_012314.6 | 65.2% | 36.8% | (many diffs) |
| 18 | human | 3810 | KIR2DS5 | killer cell immunoglobulin ... | NM_014513.2 | 65.1% | 37.5% | (many diffs) |
| 19 | human | 102725023 | LOC102725023 | killer cell immunoglobulin-... | NM_001360171.1 | 64.9% | 37.5% | (many diffs) |
| 20 | human | 3808 | KIR2DS3 | killer cell immunoglobulin ... | NM_012313.1 | 64.8% | 37.5% | (many diffs) |
| 21 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291701.1 | 62.6% | 39.7% | (many diffs) |
| 22 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291695.1 | 61.3% | 35.1% | (many diffs) |
| 23 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_001080772.2 | 60.8% | 35.3% | (many diffs) |
| 24 | human | 3804 | KIR2DL3 | killer cell immunoglobulin ... | NM_015868.3 | 60% | 34.4% | (many diffs) |
| 25 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452542.1 | 59.6% | 39% | (many diffs) |
| 26 | human | 3803 | KIR2DL2 | killer cell immunoglobulin ... | NM_014219.2 | 58.9% | 33.9% | (many diffs) |
| 27 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026783.1 | 58.5% | 43.6% | (many diffs) |
| 28 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | NM_014218.3 | 58.3% | 34.3% | (many diffs) |
| 29 | human | 112267881 | LOC112267881 | killer cell immunoglobulin-... | NM_001368251.1 | 58.1% | 33.2% | (many diffs) |
| 30 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281971.2 | 55.9% | 39% | (many diffs) |
| 31 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_017030286.1 | 55.2% | 44.6% | (many diffs) |
| 32 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_011526939.2 | 55.1% | 45.1% | (many diffs) |
| 33 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452543.1 | 53.2% | 26.7% | (many diffs) |
| 34 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452544.1 | 53.2% | 26.7% | (many diffs) |
| 35 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452545.1 | 53.2% | 26.7% | (many diffs) |
| 36 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281972.2 | 51.8% | 40.5% | (many diffs) |
| 37 | human | 57292 | KIR2DL5A | killer cell immunoglobulin ... | NM_020535.3 | 51.4% | 28.2% | (many diffs) |
| 38 | human | 553128 | KIR2DL5B | killer cell immunoglobulin ... | NM_001018081.1 | 51.2% | 37.8% | (many diffs) |
| 39 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_002255.6 | 50.9% | 27.6% | (many diffs) |
| 40 | human | 112268354 | LOC112268354 | killer cell immunoglobulin-... | NM_001368253.1 | 50.8% | 27.4% | (many diffs) |
| 41 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026782.1 | 47.3% | 24.8% | (many diffs) |
| 42 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291696.1 | 42.5% | 15.4% | (many diffs) |
| 43 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291700.1 | 18.7% | 13.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 993
- ORF length:
- 924
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCGCTCATG GTCGTCAGCA TGGCGTGTGT TGGGTTGTTC TTGGTCCAGA 121 GGGCCGGTCC ACACATGGGT GGTCAGGACA AGCCCTTCCT GTCTGCCTGG CCCAGCGCTG 181 TGGTGCCTCG CGGAGGACAC GTGACTCTTC GGTGTCACTA TCGTCATAGG TTTAACAATT 241 TCATGCTATA CAAAGAAGAC AGAATCCACG TTCCCATCTT CCATGGCAGA ATATTCCAGG 301 AGGGCTTCAA CATGAGCCCT GTGACCACAG CACATGCAGG GAACTACACA TGTCGGGGTT 361 CACACCCACA CTCCCCCACT GGGTGGTCGG CACCCAGCAA CCCCATGGTG ATCATGGTCA 421 CAGGAAACCA CAGAAAACCT TCCCTCCTGG CCCACCCAGG TCCCCTGGTG AAATCAGGAG 481 AGAGAGTCAT CCTGCAATGT TGGTCAGATA TCATGTTTGA GCACTTCTTT CTGCACAAAG 541 AGTGGATCTC TAAGGACCCC TCACGCCTCG TTGGACAGAT CCATGATGGG GTCTCCAAGG 601 CCAATTTCTC CATCGGTTCC ATGATGCGTG CCCTTGCAGG GACCTACAGA TGCTACGGTT 661 CTGTTACTCA CACCCCCTAT CAGTTGTCAG CTCCCAGTGA TCCCCTGGAC ATCGTGGTCA 721 CAGGTCTATA TGAGAAACCT TCTCTCTCAG CCCAGCCGGG CCCCAAGGTT CAGGCAGGAG 781 AGAGCGTGAC CTTGTCCTGT AGCTCCCGGA GCTCCTATGA CATGTACCAT CTATCCAGGG 841 AGGGGGGAGC CCATGAACGT AGGCTCCCTG CAGTGCGCAA GGTCAACAGA ACATTCCAGG 901 CAGATCTTCC CTCTGGGCCC TGCCACCCAC GGAGGGACCT ACAGATGCTT CAGCTCTTTC 961 CGTCACTCTC CCTACGAGTG GTCAGACCCG AGTGACCCAC TGCTTGTTTC TGTCACAGGA 1021 AACCCTTCAA GTAGTTGGCC TTCACCCACA GAACCAAGCT CCAAATCTGG TAACCTCAGA 1081 CACCTGCACA TGTCTGATTG GGACCTCAGT GGTCAAAATC CCTTTCACCA TCCTCCTCTT 1141 CTTTCTCCTT CATCGCTGGT GCTCCAACAA AAAAAAATGC TGCTGTAATG GACCAAGAGC 1201 CTGCAGGGAA CAGAAGTTGC CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg 1261 cttatcaatt tgttgcaacg aac