Construct: ORF ccsbBroadEn_14905

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018966.1_s300c1, BRDN0000458262
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
MKNK1 (8569)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8569 MKNK1 MAPK interacting serine/thr... NM_003684.7 96.5% 41.7% (many diffs)
2 human 8569 MKNK1 MAPK interacting serine/thr... XM_006711000.1 90.3% 40.4% (many diffs)
3 human 8569 MKNK1 MAPK interacting serine/thr... XM_006711001.3 88.8% 37.8% (many diffs)
4 human 8569 MKNK1 MAPK interacting serine/thr... XM_006711002.3 88.8% 37.8% (many diffs)
5 human 8569 MKNK1 MAPK interacting serine/thr... XM_006711003.1 88.8% 37.8% (many diffs)
6 human 8569 MKNK1 MAPK interacting serine/thr... NM_001135553.4 87.8% 37.6% (many diffs)
7 human 8569 MKNK1 MAPK interacting serine/thr... XM_024450508.1 87.8% 37.6% (many diffs)
8 human 8569 MKNK1 MAPK interacting serine/thr... XM_024450509.1 87.8% 37.6% (many diffs)
9 human 8569 MKNK1 MAPK interacting serine/thr... XM_024450510.1 87.8% 37.6% (many diffs)
10 human 8569 MKNK1 MAPK interacting serine/thr... XM_006711007.1 78.6% 23.9% (many diffs)
11 human 8569 MKNK1 MAPK interacting serine/thr... XM_024450511.1 78.6% 23.9% (many diffs)
12 human 8569 MKNK1 MAPK interacting serine/thr... XM_017002652.2 77% 24.8% (many diffs)
13 human 8569 MKNK1 MAPK interacting serine/thr... XM_017002653.1 77% 24.8% (many diffs)
14 human 8569 MKNK1 MAPK interacting serine/thr... XM_017002659.1 73.8% 49% (many diffs)
15 human 8569 MKNK1 MAPK interacting serine/thr... XM_017002660.2 72.4% 45.9% (many diffs)
16 human 8569 MKNK1 MAPK interacting serine/thr... XM_017002661.2 72.4% 45.9% (many diffs)
17 human 8569 MKNK1 MAPK interacting serine/thr... XM_017002662.1 72.4% 45.9% (many diffs)
18 human 8569 MKNK1 MAPK interacting serine/thr... NM_198973.5 71.3% 45.7% (many diffs)
19 human 8569 MKNK1 MAPK interacting serine/thr... XM_024450512.1 71.3% 45.7% (many diffs)
20 human 8569 MKNK1 MAPK interacting serine/thr... XM_024450513.1 71.3% 45.7% (many diffs)
21 human 8569 MKNK1 MAPK interacting serine/thr... XM_024450514.1 71.3% 45.7% (many diffs)
22 human 8569 MKNK1 MAPK interacting serine/thr... XM_006711013.1 70% 13% (many diffs)
23 human 8569 MKNK1 MAPK interacting serine/thr... XM_006711014.1 70% 13% (many diffs)
24 human 8569 MKNK1 MAPK interacting serine/thr... XM_006711015.1 70% 13% (many diffs)
25 human 8569 MKNK1 MAPK interacting serine/thr... NR_146512.2 43.9% (many diffs)
26 human 8569 MKNK1 MAPK interacting serine/thr... NR_024176.3 41.2% (many diffs)
27 human 8569 MKNK1 MAPK interacting serine/thr... NR_024174.3 41.1% (many diffs)
28 mouse 17346 Mknk1 MAP kinase-interacting seri... NM_001285487.1 77.4% 34.9% (many diffs)
29 mouse 17346 Mknk1 MAP kinase-interacting seri... XM_006502822.3 77.4% 34.9% (many diffs)
30 mouse 17346 Mknk1 MAP kinase-interacting seri... XM_006502823.3 77.1% 35.1% (many diffs)
31 mouse 17346 Mknk1 MAP kinase-interacting seri... NM_001285488.1 76.4% 34.6% (many diffs)
32 mouse 17346 Mknk1 MAP kinase-interacting seri... NM_021461.5 76.4% 34.6% (many diffs)
33 mouse 17346 Mknk1 MAP kinase-interacting seri... XM_006502825.3 64.6% 42.6% (many diffs)
34 mouse 17346 Mknk1 MAP kinase-interacting seri... XM_017320015.1 63.5% 42.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
96
ORF end:
726
ORF length:
630
Sequence:
1AATGGATTTT ATTTTGACTG ATAGTGACCT GTTCGTTGCA ACAAATTGAT GAGCAATGCT
61TTTTTATAAT GCCAACTTTG TACAAAAAAG TTGGCATGGT ATCTTCTCAA AAGTTGGAAA
121AACCTATAGA GATGGGCAGT AGCGAACCCC TTCCCATCGC AGATGGTGAC AGGAGGAGGA
181AGAAGAAGCG GAGGGGCCGG GCCACTGACT CCTTGCCAGG AAAGTTTGAA GATATGTACA
241AGCTGACCTC TGAATTGCTT GGAGAGGGAG CCTATGCCAA AGTTCAAGGT GCCGTGAGCC
301TACAGAATGG CAAAGAGTAT GCCGTCAAAA TCATCGAGAA ACAAGCAGGG CACAGTCGGA
361GTAGGGTGTT TCGAGAGGTG GAGACGCTGT ATCAGTGTCA GGGAAACAAG AACATTTTGG
421AGCTGATTGA GTTCTTTGAA GATGACACAA GGTTTTACTT GGTCTTTGAG AAATTGCAAG
481GAGGTTCCAT CTTAGCCCAC ATCCAGAAGC AAAAGCACTT CAATGAGCGA GAAGCCAGCC
541GAGTGGTGCG GGACGTTGCT GCTGCCCTTG ACTTCCTGCA TACCAAAGAC AAAGTCTCTC
601TCTGTCACCT AGGCTGGAGT GCTATGGCGC CATCAGGGCT CACTGCAGCC CCAACCTCCC
661TGGGCTCCAG TGATCCTCCC ACCTCAGCCT CCCAAGTAGC TGGGACTACA NGCATTTGCT
721CATNGTGATN TGAAACCAAG NAAAATATAT TGTGTGAATC TCCAGGAAAA GGTGTCTCCA
781GTGAAAAATC TGTGACTTTG ACTTGGGCAG TGGGATGAAA CTGAACAACT CCTTGTACCC
841CCATAACCAC ACCAGAGCTG ACCACCCCAT GTGGCTCTGC AGAATACATG GCCCCTGAAG
901GTAGTNGAGG TCTTCACGGA CCAGGCCACA TTCTACGACA AGCGCTGTGA CCTGTGGAGC
961CTGGGCGTGG TCCTCTACAT CATGCTGAGT GGCTACCCAC CCTTCGTGGG TCACTGCGGG
1021GCCGACTGTG GCTGGGACCG GGGCGAGGTC TGCAGGGTGT GCCAGAACAA GCTGTTTGAA
1081AGCATCCAGG AAGGCAAGTA TGAGTTTCCT GACAAGGACT GGGCACACAT CTCCAGTGAA
1141GCCAAAGACC TCATCTCCAA GCTCCTGGTG CGAGATGCAA AGCAGAGACT TAGCGCCGCC
1201CAAGTTCTGC AGCACCCATG GGTGCAGGGG CAAGCTCCAG AAAAGGGACT CCCCACGCCG
1261CAAGTCCTCC AGAGGAACAG CAGCACAATG GACCTGACGC TCTTCGCAGC TGAGGCCATC
1321GCCCTTAACC GCCAGCTATC TCAGCACGAA GAGAACGAAC TAGCAGAGGA GCCAGAGGCA
1381CTAGCTGATG GCCTCTGCTC CATGAAGCTT TCCCCTCCCT GCAAGTCACG CCTGGCCCGG
1441AGACGGGCCC TGGCCCAGGC AGGCCGTGGT GAAGACAGGA GCCCGCCCAC AGCACTCTGC
1501CCAACTTTCT TGTACAAAGT TGGCATTATA AGAAAGCATT GCTTATCAAT TTGTTGCAAC
1561GAACAGGTCA CTATCAGTCA AAATAAAATC ATTATTGCCA TCCAGGCTGG AATCCCCCC

Download FASTA (ORF) (Full)