Transcript: Mouse NM_001040669.1

Mus musculus predicted gene 5169 (Gm5169), mRNA.

Source:
NCBI, updated 2017-06-25
Taxon:
Mus musculus (mouse)
Gene:
Gm5169 (382277)
Length:
917
CDS:
130..768

Additional Resources:

NCBI RefSeq record:
NM_001040669.1
NBCI Gene record:
Gm5169 (382277)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001040669.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000253105 CATAAGTGTGATATGGATATA pLKO_005 547 CDS 100% 13.200 7.920 N Gm5169 n/a
2 TRCN0000177598 CCAAAGGATGGTTACTTATTA pLKO.1 157 CDS 100% 15.000 7.500 Y Gm4836 n/a
3 TRCN0000253106 TAGAAGCAGATGAAGATATAA pLKO_005 272 CDS 100% 15.000 7.500 Y Gm5169 n/a
4 TRCN0000255531 ACCAAAGGATGGTTACTTATT pLKO_005 156 CDS 100% 13.200 6.600 Y Gm10486 n/a
5 TRCN0000255755 AGAAGCAGATGAAGATATAAG pLKO_005 273 CDS 100% 13.200 6.600 Y Gm1993 n/a
6 TRCN0000281404 AGACAGTATGTTGGATAAATC pLKO_005 303 CDS 100% 13.200 6.600 Y Gm6121 n/a
7 TRCN0000270438 AGATGGTGAAGAGACATTATG pLKO_005 747 CDS 100% 13.200 6.600 Y Gm5934 n/a
8 TRCN0000255758 CAAAGGATGGTTACTTATTAC pLKO_005 158 CDS 100% 13.200 6.600 Y Gm1993 n/a
9 TRCN0000177599 CAAGACAGTATGTTGGATAAA pLKO.1 301 CDS 100% 13.200 6.600 Y Gm4836 n/a
10 TRCN0000255533 CGTAGAAGCAGATGAAGATAT pLKO_005 270 CDS 100% 13.200 6.600 Y Gm10486 n/a
11 TRCN0000198925 GCAGGCTCATTCTGAAGTAAA pLKO.1 210 CDS 100% 13.200 6.600 Y Gm4836 n/a
12 TRCN0000262079 GTAGAAGCAGATGAAGATATA pLKO_005 271 CDS 100% 13.200 6.600 Y Gm10488 n/a
13 TRCN0000255759 GTAGATGGTGAAGAGACATTA pLKO_005 745 CDS 100% 13.200 6.600 Y Gm1993 n/a
14 TRCN0000265743 TAGATGGTGAAGAGACATTAT pLKO_005 746 CDS 100% 13.200 6.600 Y Gm2030 n/a
15 TRCN0000256213 TTCTCACTTGCTGGTACATTT pLKO_005 827 3UTR 100% 13.200 6.600 Y Gm2030 n/a
16 TRCN0000272121 ACAAGACAGTATGTTGGATAA pLKO_005 300 CDS 100% 10.800 5.400 Y Gm14819 n/a
17 TRCN0000262080 ACTTATTACTTCTTGACTATG pLKO_005 170 CDS 100% 10.800 5.400 Y Gm10488 n/a
18 TRCN0000282086 AGAAGAAGAGCAGGCTCATTC pLKO_005 201 CDS 100% 10.800 5.400 Y Gm10488 n/a
19 TRCN0000272137 AGAGATGAACAAGACAGTATG pLKO_005 292 CDS 100% 10.800 5.400 Y Gm10487 n/a
20 TRCN0000282085 ATGATGATGGGAATGCAAATC pLKO_005 473 CDS 100% 10.800 5.400 Y Gm10488 n/a
21 TRCN0000262129 ATTACTTCTTGACTATGATTC pLKO_005 174 CDS 100% 10.800 5.400 Y Gm2012 n/a
22 TRCN0000262245 CAGGCTCATTCTGAAGTAAAG pLKO_005 211 CDS 100% 10.800 5.400 Y Slx n/a
23 TRCN0000255325 CATGATGATGGGAATGCAAAT pLKO_005 472 CDS 100% 10.800 5.400 Y Gm6121 n/a
24 TRCN0000255535 GAGACCAACAACTACGATATG pLKO_005 715 CDS 100% 10.800 5.400 Y Gm10486 n/a
25 TRCN0000255534 GCTTCAGAATTGGACCTTATG pLKO_005 430 CDS 100% 10.800 5.400 Y Gm10486 n/a
26 TRCN0000282088 GGAAGTACAGAATCCAGTAAC pLKO_005 450 CDS 100% 10.800 5.400 Y Gm10488 n/a
27 TRCN0000253107 GGAGACCAACAACTACGATAT pLKO_005 714 CDS 100% 10.800 5.400 Y Gm5169 n/a
28 TRCN0000256699 TCTCACTTGCTGGTACATTTG pLKO_005 828 3UTR 100% 10.800 5.400 Y Gm4297 n/a
29 TRCN0000272118 TGAAGAAGTAGTTGGAGATAC pLKO_005 495 CDS 100% 10.800 5.400 Y Gm14819 n/a
30 TRCN0000253104 TGCTTCAGAATTGGACCTTAT pLKO_005 429 CDS 100% 10.800 5.400 Y Gm5169 n/a
31 TRCN0000255324 TGGATATACAGAAATTCAATG pLKO_005 560 CDS 100% 10.800 5.400 Y Gm6121 n/a
32 TRCN0000255756 TTTCCCATCTTCAGACTAATG pLKO_005 794 3UTR 100% 10.800 5.400 Y Gm1993 n/a
33 TRCN0000262128 AGCATTAAATCTGTCCGAATG pLKO_005 624 CDS 100% 6.000 3.000 Y Gm2012 n/a
34 TRCN0000272285 CGTTCTGTAGAGACACCAATG pLKO_005 367 CDS 100% 6.000 3.000 Y Gm14632 n/a
35 TRCN0000267556 GTAGTTGGAGATACACGAAAG pLKO_005 502 CDS 100% 6.000 3.000 Y Gm6121 n/a
36 TRCN0000272262 ACGTAGAAGCAGATGAAGATA pLKO_005 269 CDS 100% 5.625 2.813 Y Gm10096 n/a
37 TRCN0000270058 AGTTGGAGATACACGAAAGAA pLKO_005 504 CDS 100% 5.625 2.813 Y Gm5168 n/a
38 TRCN0000347815 CAGACCCTGGAAGCAATTGAA pLKO_005 655 CDS 100% 5.625 2.813 Y Gm14525 n/a
39 TRCN0000284688 GAAGTCCATGGAGGGTTTGAT pLKO_005 687 CDS 100% 5.625 2.813 Y Gm10147 n/a
40 TRCN0000272284 TAAGTGGTGAACAGCAAGTTA pLKO_005 404 CDS 100% 5.625 2.813 Y Gm14632 n/a
41 TRCN0000262131 ACACGAAAGAAGATCAACAAC pLKO_005 514 CDS 100% 4.950 2.475 Y Gm2012 n/a
42 TRCN0000284666 ACAGAATCCAGTAACTCATGA pLKO_005 456 CDS 100% 4.950 2.475 Y Gm10058 n/a
43 TRCN0000272223 ACGTTCTGTAGAGACACCAAT pLKO_005 366 CDS 100% 4.950 2.475 Y Gm10058 n/a
44 TRCN0000285694 AGACCAACAACTACGATATGC pLKO_005 716 CDS 100% 4.950 2.475 Y Gm14819 n/a
45 TRCN0000347861 AGTAGTTGGAGATACACGAAA pLKO_005 501 CDS 100% 4.950 2.475 Y Gm14525 n/a
46 TRCN0000363996 AGTAGTTGGAGATACACGAAA pLKO_005 501 CDS 100% 4.950 2.475 Y Gm10487 n/a
47 TRCN0000272162 ATACACGAAAGAAGATCAACA pLKO_005 512 CDS 100% 4.950 2.475 Y Gm10230 n/a
48 TRCN0000285691 ATATGCCGCCTCACGTAGAAG pLKO_005 257 CDS 100% 4.950 2.475 Y Gm14819 n/a
49 TRCN0000297031 ATGCTTCAGAATTGGACCTTA pLKO_005 428 CDS 100% 4.950 2.475 Y Gm10487 n/a
50 TRCN0000178574 CAAGTTAGGAATGCTTCAGAA pLKO.1 418 CDS 100% 4.950 2.475 Y Gm4836 n/a
51 TRCN0000272264 CACGAAAGAAGATCAACAACA pLKO_005 515 CDS 100% 4.950 2.475 Y Gm10096 n/a
52 TRCN0000272192 CAGAATCCAGTAACTCATGAT pLKO_005 457 CDS 100% 4.950 2.475 Y Gm10230 n/a
53 TRCN0000179090 CCAACAACTACGATATGCTTT pLKO.1 719 CDS 100% 4.950 2.475 Y Gm5168 n/a
54 TRCN0000200034 CCTCACGTAGAAGCAGATGAA pLKO.1 265 CDS 100% 4.950 2.475 Y Gm4836 n/a
55 TRCN0000284710 CTCACGTAGAAGCAGATGAAG pLKO_005 266 CDS 100% 4.950 2.475 Y Gm14632 n/a
56 TRCN0000281886 CTTATTACTTCTTGACTATGA pLKO_005 171 CDS 100% 4.950 2.475 Y Gm14632 n/a
57 TRCN0000272263 CTTCAGAATTGGACCTTATGG pLKO_005 431 CDS 100% 4.950 2.475 Y Gm10096 n/a
58 TRCN0000180944 GAACATGGAGACCAACAACTA pLKO.1 708 CDS 100% 4.950 2.475 Y Gm5168 n/a
59 TRCN0000363943 GAAGAAGAGCAGGCTCATTCT pLKO_005 202 CDS 100% 4.950 2.475 Y Gm10230 n/a
60 TRCN0000272136 GAAGTACAGAATCCAGTAACT pLKO_005 451 CDS 100% 4.950 2.475 Y Gm10487 n/a
61 TRCN0000178261 GACCTTATGGAAGTACAGAAT pLKO.1 442 CDS 100% 4.950 2.475 Y Gm4836 n/a
62 TRCN0000177355 GCAGATGAAGATATAAGAGAT pLKO.1 277 CDS 100% 4.950 2.475 Y Gm4836 n/a
63 TRCN0000177276 GCTGGTACATTTGTAACCAAA pLKO.1 836 3UTR 100% 4.950 2.475 Y Xlr n/a
64 TRCN0000284692 GTACAGAATCCAGTAACTCAT pLKO_005 454 CDS 100% 4.950 2.475 Y Gm10096 n/a
65 TRCN0000272234 GTTGGAGATACACGAAAGAAG pLKO_005 505 CDS 100% 4.950 2.475 Y Gm10147 n/a
66 TRCN0000284669 TACACGAAAGAAGATCAACAA pLKO_005 513 CDS 100% 4.950 2.475 Y Gm10058 n/a
67 TRCN0000272060 TACTTCTTGACTATGATTCAG pLKO_005 176 CDS 100% 4.950 2.475 Y Gm14819 n/a
68 TRCN0000270443 TAGTTGGAGATACACGAAAGA pLKO_005 503 CDS 100% 4.950 2.475 Y Gm5935 n/a
69 TRCN0000272225 TGGAGACCAACAACTACGATA pLKO_005 713 CDS 100% 4.950 2.475 Y Gm10058 n/a
70 TRCN0000284689 TGGTTACTTATTACTTCTTGA pLKO_005 165 CDS 100% 4.950 2.475 Y Gm10147 n/a
71 TRCN0000272240 TTGACTATGATTCAGATGAAG pLKO_005 182 CDS 100% 4.950 2.475 Y Gm10096 n/a
72 TRCN0000272261 AGTGGTGAACAGCAAGTTAGG pLKO_005 406 CDS 100% 4.050 2.025 Y Gm10147 n/a
73 TRCN0000182354 GAAGAAGAAGAGCAGGCTCAT pLKO.1 199 CDS 100% 4.050 2.025 Y Gm4836 n/a
74 TRCN0000272235 GAATATGCCGCCTCACGTAGA pLKO_005 255 CDS 100% 4.050 2.025 Y Gm10147 n/a
75 TRCN0000253103 TACCAAAGGATGGTTACTTAT pLKO_005 155 CDS 100% 0.000 0.000 Y Gm5169 n/a
76 TRCN0000270442 GAAGTAAAGAGGCCAGCATTT pLKO_005 223 CDS 100% 10.800 5.400 Y Gm5935 n/a
77 TRCN0000270393 TTCTCACTTGCTGGTACATTG pLKO_005 827 3UTR 100% 10.800 5.400 Y Gm5934 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001040669.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.