Transcript: Human NM_002171.2

Homo sapiens interferon alpha 10 (IFNA10), mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
IFNA10 (3446)
Length:
963
CDS:
47..616

Additional Resources:

NCBI RefSeq record:
NM_002171.2
NBCI Gene record:
IFNA10 (3446)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002171.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000372485 ATAACCACGACGCGTTGAATC pLKO_005 704 3UTR 100% 10.800 7.560 N IFNA10 n/a
2 TRCN0000372486 TGTAAAGAAGTGTCGTGTATA pLKO_005 749 3UTR 100% 13.200 7.920 N IFNA10 n/a
3 TRCN0000005830 CCTGGGACAAATGGGAAGAAT pLKO.1 166 CDS 100% 5.625 3.375 N IFNA10 n/a
4 TRCN0000005832 CCTTGATACTCCTGGGACAAA pLKO.1 156 CDS 100% 4.950 2.970 N IFNA10 n/a
5 TRCN0000378790 ATGATCCTGATTGACTAATAC pLKO_005 636 3UTR 100% 13.200 6.600 Y IFNA17 n/a
6 TRCN0000372492 CATCCTGGCTGTGAGGAAATA pLKO_005 463 CDS 100% 13.200 6.600 Y IFNA17 n/a
7 TRCN0000005817 CCTGAAGGACAGACATGATTT pLKO.1 202 CDS 100% 13.200 6.600 Y IFNA4 n/a
8 TRCN0000372497 CTGATTGACTAATACATTATC pLKO_005 642 3UTR 100% 13.200 6.600 Y IFNA4 n/a
9 TRCN0000005814 CATGAGTTCTTCCATTTCAAA pLKO.1 672 3UTR 100% 5.625 2.813 Y IFNA4 n/a
10 TRCN0000005815 CCTGGCTGTGAGGAAATACTT pLKO.1 466 CDS 100% 5.625 2.813 Y IFNA4 n/a
11 TRCN0000372488 GATTAAGGAGGAAGGATTGAA pLKO_005 597 CDS 100% 5.625 2.813 Y IFNA14 n/a
12 TRCN0000372429 GGTTGTCAGAGCAGAAATCAT pLKO_005 541 CDS 100% 5.625 2.813 Y IFNA14 n/a
13 TRCN0000005819 CATTTCAAAGACTCACTTCTA pLKO.1 684 3UTR 100% 4.950 2.475 Y IFNA14 n/a
14 TRCN0000005812 CCAGCAGACCTTCAATCTCTT pLKO.1 298 CDS 100% 4.950 2.475 Y IFNA21 n/a
15 TRCN0000005841 GAACTTTACCAGCAACTGAAT pLKO.1 377 CDS 100% 4.950 2.475 Y IFNA17 n/a
16 TRCN0000429348 GATCCAGCAGACCTTCAATCT pLKO_005 295 CDS 100% 4.950 2.475 Y IFNA7 n/a
17 TRCN0000005829 GCAATGATCCTGATTGACTAA pLKO.1 633 3UTR 100% 4.950 2.475 Y IFNA10 n/a
18 TRCN0000372431 TACTTCCAAAGAATCACTCTT pLKO_005 482 CDS 100% 4.950 2.475 Y IFNA14 n/a
19 TRCN0000005833 TCAGCTACAAATCCATCTGTT pLKO.1 87 CDS 100% 4.950 2.475 Y IFNA10 n/a
20 TRCN0000005865 GCTGTGAGGAAATACTTCCAA pLKO.1 470 CDS 100% 3.000 1.500 Y IFNA2 n/a
21 TRCN0000005831 CCTGATGAATGAGGACTCCAT pLKO.1 445 CDS 100% 2.640 1.320 Y IFNA10 n/a
22 TRCN0000005816 GCATGTGTGATACAGGAGGTT pLKO.1 407 CDS 100% 2.640 1.320 Y IFNA4 n/a
23 TRCN0000005818 CTTCCAAAGAATCACTCTTTA pLKO.1 484 CDS 100% 1.320 0.660 Y IFNA4 n/a
24 TRCN0000005842 CCTGGGTAATAGGAGGGCCTT pLKO.1 139 CDS 100% 0.720 0.360 Y IFNA17 n/a
25 TRCN0000423512 AGAATCACTCTTTATCTAATG pLKO_005 491 CDS 100% 10.800 5.400 Y IFNA7 n/a
26 TRCN0000005864 CCATGAGATGATCCAGCAGAT pLKO.1 286 CDS 100% 4.050 2.025 Y IFNA2 n/a
27 TRCN0000005857 CCTTCAATCTCTTCAGCACAA pLKO.1 306 CDS 100% 4.050 2.025 Y IFNA6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002171.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06429 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_06429 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000479248 CATAGTTTTGGTTCAAGTGGTCAT pLX_317 71.3% 100% 100% V5 n/a
4 ccsbBroadEn_00823 pDONR223 100% 98.2% 95.7% None (many diffs) n/a
5 ccsbBroad304_00823 pLX_304 0% 98.2% 95.7% V5 (many diffs) n/a
6 TRCN0000473593 ATACGGGACTTATCCAGAGCGCGG pLX_317 71.1% 98.2% 95.7% V5 (many diffs) n/a
7 ccsbBroadEn_15461 pDONR223 0% 98% 95.2% None (many diffs) n/a
8 ccsbBroad304_15461 pLX_304 0% 98% 95.2% V5 (many diffs) n/a
9 TRCN0000478552 TGCTACGTGAACAACCGGTCGAAG pLX_317 71.3% 98% 95.2% V5 (many diffs) n/a
10 ccsbBroadEn_00829 pDONR223 100% 97.3% 95.2% None (many diffs) n/a
11 ccsbBroad304_00829 pLX_304 0% 97.3% 95.2% V5 (many diffs) n/a
12 TRCN0000481362 GTAGTACCACTTGAAATCGCCCGT pLX_317 72% 97.3% 95.2% V5 (many diffs) n/a
13 ccsbBroadEn_00826 pDONR223 100% 95.9% 92% None (many diffs) n/a
14 ccsbBroad304_00826 pLX_304 0% 95.9% 92% V5 (many diffs) n/a
15 TRCN0000476535 GTCTTCCGCAGTATGACTCGAATG pLX_317 48.8% 95.9% 92% V5 (many diffs) n/a
16 ccsbBroadEn_00830 pDONR223 100% 95.2% 91% None (many diffs) n/a
17 ccsbBroad304_00830 pLX_304 0% 95.2% 91% V5 (many diffs) n/a
18 TRCN0000471661 ACTACTTTTTTCTTTATTTCTCCA pLX_317 71.7% 95.2% 91% V5 (many diffs) n/a
19 ccsbBroadEn_00828 pDONR223 100% 91% 84.1% None (many diffs) n/a
20 ccsbBroad304_00828 pLX_304 0% 91% 84.1% V5 (many diffs) n/a
21 ccsbBroadEn_00824 pDONR223 100% 89.2% 82.5% None (many diffs) n/a
22 ccsbBroad304_00824 pLX_304 0% 89.2% 82.5% V5 (many diffs) n/a
23 TRCN0000477287 TCTACCGGGACGACTGAAGCATTC pLX_317 48.8% 89.2% 82.5% V5 (many diffs) n/a
24 ccsbBroadEn_00827 pDONR223 100% 88.4% 80.4% None (many diffs) n/a
25 ccsbBroad304_00827 pLX_304 0% 88.4% 80.4% V5 (many diffs) n/a
26 TRCN0000476096 GCCATGACTGCTGCCGTATACATC pLX_317 52.5% 88.4% 80.4% V5 (many diffs) n/a
27 ccsbBroadEn_00825 pDONR223 100% 88.3% 80.9% None (many diffs) n/a
28 ccsbBroad304_00825 pLX_304 0% 88.3% 80.9% V5 (many diffs) n/a
29 TRCN0000479242 AGCGATAAGTTTAAGGCCAGGATA pLX_317 77.2% 88.3% 80.9% V5 (many diffs) n/a
30 ccsbBroadEn_00822 pDONR223 100% 88% 80.4% None (many diffs) n/a
31 ccsbBroad304_00822 pLX_304 0% 88% 80.4% V5 (many diffs) n/a
32 TRCN0000477213 TCCTACAAAGAGCATGATATTAAA pLX_317 43.2% 88% 80.4% V5 (many diffs) n/a
33 ccsbBroadEn_00821 pDONR223 100% 87.6% 78.8% None (many diffs) n/a
34 ccsbBroad304_00821 pLX_304 0% 87.6% 78.8% V5 (many diffs) n/a
35 TRCN0000479010 GCCTTAGGGCGGCCTGGCCATAAT pLX_317 72.5% 87.6% 78.8% V5 (many diffs) n/a
36 ccsbBroadEn_06430 pDONR223 100% 87.6% 79.3% None (many diffs) n/a
37 ccsbBroad304_06430 pLX_304 0% 87.6% 79.3% V5 (many diffs) n/a
38 TRCN0000472075 GGACGAGAACCTCTTCCGAGTAAG pLX_317 71% 87.6% 79.3% V5 (many diffs) n/a
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