Transcript: Human NR_034022.1

Homo sapiens zinc finger protein 655 pseudogene (LOC100131257), non-coding RNA.

Source:
NCBI, updated 2018-05-25
Taxon:
Homo sapiens (human)
Gene:
LOC100131257 (100131257)
Length:
21017
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_034022.1
NBCI Gene record:
LOC100131257 (100131257)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_034022.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000141159 CCAGACAGATTCACAGCCAAA pLKO.1 10728 3UTR 100% 4.050 2.430 N FLJ44796 n/a
2 TRCN0000121782 CCAGCCAAACTAAGCTTCATA pLKO.1 9235 3UTR 100% 5.625 2.813 Y FLJ44796 n/a
3 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 929 3UTR 100% 4.950 2.475 Y CFLAR n/a
4 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 929 3UTR 100% 4.950 2.475 Y C19orf31 n/a
5 TRCN0000159082 GAAACCATCATTCTCAGCAAA pLKO.1 13053 3UTR 100% 4.950 2.475 Y ANKRD30B n/a
6 TRCN0000128231 GAGGACACAAACAAATGGAAA pLKO.1 11687 3UTR 100% 4.950 2.475 Y POT1-AS1 n/a
7 TRCN0000127836 GCATGTTCTAACCCAATGCAA pLKO.1 8559 3UTR 100% 3.000 1.500 Y LINC01949 n/a
8 TRCN0000156019 CATGGAATACTATGCAGCCAT pLKO.1 12986 3UTR 100% 2.640 1.320 Y LOC340211 n/a
9 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 1092 3UTR 100% 10.800 5.400 Y SMIM11A n/a
10 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 20151 3UTR 100% 4.950 2.475 Y LOC339059 n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 13678 3UTR 100% 4.950 2.475 Y KAAG1 n/a
12 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 927 3UTR 100% 4.950 2.475 Y ERN2 n/a
13 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 927 3UTR 100% 4.950 2.475 Y P3H4 n/a
14 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 927 3UTR 100% 4.950 2.475 Y P3H4 n/a
15 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 20154 3UTR 100% 4.950 2.475 Y ORAI2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_034022.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08908 pDONR223 100% 6.1% None (many diffs) n/a
2 ccsbBroad304_08908 pLX_304 0% 6.1% V5 (many diffs) n/a
3 TRCN0000467232 CCATCTTTAAACGACTAACACCTT pLX_317 29.8% 6.1% V5 (many diffs) n/a
4 ccsbBroadEn_13802 pDONR223 100% 3.1% None (many diffs) n/a
5 ccsbBroad304_13802 pLX_304 0% 3.1% V5 (many diffs) n/a
6 TRCN0000470799 AAGCCATAAGTTAGAAACAAACCG pLX_317 52.2% 3.1% V5 (many diffs) n/a
7 ccsbBroadEn_15949 pDONR223 0% 1.3% None (many diffs) n/a
8 ccsbBroad304_15949 pLX_304 0% 1.3% V5 (many diffs) n/a
9 TRCN0000471984 GACGATGCTGCTGGTGATGGACGC pLX_317 100% 1.3% V5 (many diffs) n/a
10 ccsbBroadEn_12783 pDONR223 100% .8% None (many diffs) n/a
11 ccsbBroad304_12783 pLX_304 0% .8% V5 (many diffs) n/a
12 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% .8% V5 (many diffs) n/a
13 ccsbBroadEn_15487 pDONR223 0% .7% None (many diffs) n/a
14 ccsbBroad304_15487 pLX_304 0% .7% V5 (many diffs) n/a
15 TRCN0000473708 TAGCATCGTTGCACGCGCACGTTG pLX_317 100% .7% V5 (many diffs) n/a
16 ccsbBroadEn_10261 pDONR223 100% .2% None (many diffs) n/a
17 ccsbBroad304_10261 pLX_304 0% .2% V5 (many diffs) n/a
18 TRCN0000492083 TTATAGGCCCAGAGCACTACCAAC pLX_317 100% .2% V5 (many diffs) n/a
Download CSV