Transcript: Human XR_946776.2

PREDICTED: Homo sapiens ATPase family AAA domain containing 3B (ATAD3B), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATAD3B (83858)
Length:
2547
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_946776.2
NBCI Gene record:
ATAD3B (83858)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_946776.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245163 TTTGACAACTGTGTTCTTAAG pLKO_005 1679 3UTR 100% 10.800 7.560 N ATAD3B n/a
2 TRCN0000245162 TGCCATCAACAGCCGCATTGA pLKO_005 1597 3UTR 100% 4.950 3.465 N ATAD3B n/a
3 TRCN0000245161 AGCGAGCCACTGAGGAGATAA pLKO_005 1409 3UTR 100% 13.200 7.920 N ATAD3B n/a
4 TRCN0000245164 ACACTCTTGGGAGATGCATTT pLKO_005 2204 3UTR 100% 10.800 5.400 Y ATAD3B n/a
5 TRCN0000245160 AGTCCAAGCTCAAAGAGTATG pLKO_005 422 3UTR 100% 10.800 5.400 Y ATAD3B n/a
6 TRCN0000135268 CAAGGACAAATGGAGCAACTT pLKO.1 282 3UTR 100% 4.950 2.475 Y ATAD3A n/a
7 TRCN0000148754 CAAGGACAAATGGAGCAACTT pLKO.1 282 3UTR 100% 4.950 2.475 Y ATAD3B n/a
8 TRCN0000146443 CAGTCCAAGCTCAAAGAGTAT pLKO.1 421 3UTR 100% 4.950 2.475 Y ATAD3B n/a
9 TRCN0000136856 CCAAGGACAAATGGAGCAACT pLKO.1 281 3UTR 100% 4.050 2.025 Y ATAD3A n/a
10 TRCN0000136391 CCTGCACATTTAGGATATGCT pLKO.1 2043 3UTR 100% 3.000 1.500 Y ATAD3A n/a
11 TRCN0000148730 CCTGCACATTTAGGATATGCT pLKO.1 2043 3UTR 100% 3.000 1.500 Y ATAD3B n/a
12 TRCN0000147113 CAATGAGGAGAATTTACGGAA pLKO.1 606 3UTR 100% 2.640 1.320 Y ATAD3B n/a
13 TRCN0000148571 CATTTAGGATATGCTCCTGGA pLKO.1 2049 3UTR 100% 2.160 1.080 Y ATAD3B n/a
14 TRCN0000133840 CAACTTCTCAATGAGGAGAAT pLKO.1 598 3UTR 100% 0.495 0.248 Y ATAD3A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_946776.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09121 pDONR223 100% 76.2% None (many diffs) n/a
2 ccsbBroad304_09121 pLX_304 0% 76.2% V5 (many diffs) n/a
3 TRCN0000475378 CCGTATGGCCACTCCGAGATAATT pLX_317 20.3% 76.2% V5 (many diffs) n/a
4 ccsbBroadEn_12758 pDONR223 100% 67.5% None (many diffs) n/a
5 ccsbBroad304_12758 pLX_304 0% 67.5% V5 (many diffs) n/a
6 TRCN0000479707 ATCACGTGACTAGTTACTTAATGA pLX_317 19.8% 67.5% V5 (many diffs) n/a
7 ccsbBroadEn_15089 pDONR223 98.8% 66% None (many diffs) n/a
8 ccsbBroad304_15089 pLX_304 0% 66% V5 (many diffs) n/a
9 TRCN0000469079 GCACCGATTGGCAATGTGGAATAC pLX_317 27.2% 66% V5 (many diffs) n/a
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