Construct: ORF TRCN0000466878
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003168.1_s317c1
- Derived from:
- ccsbBroadEn_10703
- DNA Barcode:
- AAAATCGACTATGATTGACAGGTG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LDLRAD4 (753)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466878
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 753 | LDLRAD4 | low density lipoprotein rec... | NM_001276249.1 | 98.9% | 98.6% | (many diffs) |
| 2 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_011525738.1 | 98.9% | 98.6% | (many diffs) |
| 3 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025965.1 | 98.9% | 98.6% | (many diffs) |
| 4 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025966.1 | 98.9% | 98.6% | (many diffs) |
| 5 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025967.1 | 98.9% | 98.6% | (many diffs) |
| 6 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025968.1 | 98.9% | 98.6% | (many diffs) |
| 7 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025969.1 | 98.9% | 98.6% | (many diffs) |
| 8 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025970.1 | 98.9% | 98.6% | (many diffs) |
| 9 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025971.1 | 98.9% | 98.6% | (many diffs) |
| 10 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025972.1 | 91.2% | 91.2% | (many diffs) |
| 11 | human | 753 | LDLRAD4 | low density lipoprotein rec... | NM_001276251.1 | 88% | 82.9% | (many diffs) |
| 12 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_011525737.1 | 87.5% | 87.2% | (many diffs) |
| 13 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025963.2 | 87.5% | 87.2% | (many diffs) |
| 14 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025964.1 | 87.5% | 87.2% | (many diffs) |
| 15 | human | 753 | LDLRAD4 | low density lipoprotein rec... | NM_001003674.3 | 84.2% | 84% | (many diffs) |
| 16 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451260.1 | 80.6% | 80.6% | (many diffs) |
| 17 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025961.1 | 78.1% | 77.9% | (many diffs) |
| 18 | human | 753 | LDLRAD4 | low density lipoprotein rec... | NM_001003675.3 | 77.6% | 77.6% | (many diffs) |
| 19 | human | 753 | LDLRAD4 | low density lipoprotein rec... | NM_181481.4 | 74% | 73.8% | (many diffs) |
| 20 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_005258140.1 | 74% | 73.8% | (many diffs) |
| 21 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_006722353.1 | 74% | 73.8% | (many diffs) |
| 22 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_006722354.1 | 74% | 73.8% | (many diffs) |
| 23 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451248.1 | 74% | 73.8% | (many diffs) |
| 24 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451249.1 | 74% | 73.8% | (many diffs) |
| 25 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451250.1 | 74% | 73.8% | (many diffs) |
| 26 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451251.1 | 74% | 73.8% | (many diffs) |
| 27 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451252.1 | 74% | 73.8% | (many diffs) |
| 28 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451253.1 | 74% | 73.8% | (many diffs) |
| 29 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451254.1 | 74% | 73.8% | (many diffs) |
| 30 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451255.1 | 74% | 73.8% | (many diffs) |
| 31 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451256.1 | 74% | 73.8% | (many diffs) |
| 32 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451257.1 | 74% | 73.8% | (many diffs) |
| 33 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451258.1 | 74% | 73.8% | (many diffs) |
| 34 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_017025962.1 | 72% | 72% | (many diffs) |
| 35 | human | 753 | LDLRAD4 | low density lipoprotein rec... | NM_181482.5 | 68.3% | 68.3% | (many diffs) |
| 36 | human | 753 | LDLRAD4 | low density lipoprotein rec... | XM_024451259.1 | 68.3% | 68.3% | (many diffs) |
| 37 | mouse | 52662 | Ldlrad4 | low density lipoprotein rec... | XM_006526092.3 | 86.5% | 86% | (many diffs) |
| 38 | mouse | 52662 | Ldlrad4 | low density lipoprotein rec... | XM_011246973.2 | 86.5% | 86% | (many diffs) |
| 39 | mouse | 52662 | Ldlrad4 | low density lipoprotein rec... | XM_006526090.3 | 67.9% | 67.4% | (many diffs) |
| 40 | mouse | 52662 | Ldlrad4 | low density lipoprotein rec... | NM_172631.3 | 64.8% | 64.3% | (many diffs) |
| 41 | mouse | 52662 | Ldlrad4 | low density lipoprotein rec... | XM_006526085.3 | 64.8% | 64.3% | (many diffs) |
| 42 | mouse | 52662 | Ldlrad4 | low density lipoprotein rec... | XM_006526086.3 | 64.8% | 64.3% | (many diffs) |
| 43 | mouse | 52662 | Ldlrad4 | low density lipoprotein rec... | XM_006526087.3 | 64.8% | 64.3% | (many diffs) |
| 44 | mouse | 52662 | Ldlrad4 | low density lipoprotein rec... | XM_006526088.3 | 64.8% | 64.3% | (many diffs) |
| 45 | mouse | 52662 | Ldlrad4 | low density lipoprotein rec... | XM_006526089.3 | 64.8% | 64.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 753
- ORF length:
- 687
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggt ggtggtcatc gtctgcctgc tgaaccacta caaagtctcc acgcggtcct 121 tcatcaaccg cccgaaccag agccggaggc gggaggacgg gctgccgcag gaagggtgcc 181 tgtggccttc agacagcgcc gcaccgcagc tgggcgcctc ggagatcatg catgccacgc 241 ggtccaggga caggttcaca gcgccgtcct tcatccagag ggatcgcttc agccgcttcc 301 agcccaccta cccctatgtg cagcacgaga ttgatcttcc tcccacCATC TCCCTGTCGG 361 ACGGTGAAGA GCCGCCTCCT TACCAGGGGC CATGCACCCT GCAGCTCCGG GACACTGAAC 421 AGCAGATGGA ACTCAACCGA GAGTCCGTGA GGGCCCCACC CAACCGAACC ATATTTGACA 481 GTGATTTAAT AGACATTGCT ATGTATAGCG GGGGTCCATG CCCACCCAGC AGCAACTCGG 541 GCATCAGTGC AAGCACCTGC AGCAGTAACG GGAGGATGGA GGGGCCACCC CCCACATACA 601 GCGAGGTGAT GGGCCACCAC CCAGGCGCCT CTTTCCTCCA TCACCAGCGC AGCAACGCAC 661 ACAGGGGCAG CAGACTGCAG TTTCAGCAGA ACAATGCAGA GAGCACAATA GTACCAATCA 721 AAGGCAAAGA TAGGAAGCCT GGGAACCTGG TCTGCCCAAC TTTCTTGTAC AAAGTGGTTG 781 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 841 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAA 901 AATCGACTAT GATTGACAGG TGACGCGTTA AGTCgacaat caacctctgg attacaaaat 961 ttgtgaaaga tt