Construct: ORF ccsbBroad304_06792

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005029.1_s304c1, BRDN0000407949
Derived from:
ccsbBroadEn_06792
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSG9 (5678)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06792
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5678 PSG9 pregnancy specific beta-1-g... NM_002784.5 99.9% 99.7% 938G>A
2 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027007.2 95.9% 95.6% (many diffs)
3 human 5675 PSG6 pregnancy specific beta-1-g... NM_001031850.4 93.6% 87.7% (many diffs)
4 human 5671 PSG3 pregnancy specific beta-1-g... NM_021016.4 91.9% 83.7% (many diffs)
5 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130167.2 91.5% 83.4% (many diffs)
6 human 440533 PSG8 pregnancy specific beta-1-g... NM_182707.3 90.9% 83.6% (many diffs)
7 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184825.2 90.9% 81.8% (many diffs)
8 human 5672 PSG4 pregnancy specific beta-1-g... XM_017026997.2 90.8% 83.6% (many diffs)
9 human 5669 PSG1 pregnancy specific beta-1-g... NM_006905.3 90.7% 82% (many diffs)
10 human 5672 PSG4 pregnancy specific beta-1-g... NM_002780.5 90.7% 83.4% (many diffs)
11 human 5676 PSG7 pregnancy specific beta-1-g... NM_002783.3 90.6% 82.9% (many diffs)
12 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184826.2 90.3% 82.1% (many diffs)
13 human 5675 PSG6 pregnancy specific beta-1-g... NM_002782.5 90.2% 84.1% (many diffs)
14 human 5669 PSG1 pregnancy specific beta-1-g... NM_001297773.2 89.4% 80.9% (many diffs)
15 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027004.2 85.3% 83.3% (many diffs)
16 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301708.2 78.1% 77.9% 709_710ins279
17 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301707.2 78% 77.6% 430_431ins279;659G>A
18 human 5673 PSG5 pregnancy specific beta-1-g... NM_001130014.2 71% 63.1% (many diffs)
19 human 5673 PSG5 pregnancy specific beta-1-g... NM_002781.4 71% 63.1% (many diffs)
20 human 5673 PSG5 pregnancy specific beta-1-g... XM_017027003.1 71% 63.1% (many diffs)
21 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526986.1 71% 63.6% (many diffs)
22 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027001.2 70.7% 64.3% (many diffs)
23 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027002.2 70.7% 64.1% (many diffs)
24 human 5669 PSG1 pregnancy specific beta-1-g... XM_005259065.4 70.6% 63.1% (many diffs)
25 human 5669 PSG1 pregnancy specific beta-1-g... NM_001330524.2 70.6% 62.9% (many diffs)
26 human 5672 PSG4 pregnancy specific beta-1-g... NM_001276495.1 70.4% 64.1% (many diffs)
27 human 5672 PSG4 pregnancy specific beta-1-g... NM_213633.3 70.4% 63.8% (many diffs)
28 human 5669 PSG1 pregnancy specific beta-1-g... XM_011527125.2 70.1% 61.7% (many diffs)
29 human 5670 PSG2 pregnancy specific beta-1-g... NM_031246.4 70.1% 61.6% (many diffs)
30 human 5680 PSG11 pregnancy specific beta-1-g... NM_002785.3 69.2% 60.6% (many diffs)
31 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527126.2 67.7% 60.3% (many diffs)
32 human 5678 PSG9 pregnancy specific beta-1-g... XM_005259075.4 66.6% 64.6% (many diffs)
33 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027005.2 66.5% 64.4% (many diffs)
34 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130168.2 65.3% 59.6% (many diffs)
35 human 5672 PSG4 pregnancy specific beta-1-g... NM_001316339.2 64.6% 59.6% (many diffs)
36 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526987.3 64.6% 56.7% (many diffs)
37 human 5676 PSG7 pregnancy specific beta-1-g... NM_001206650.2 64.6% 59.2% (many diffs)
38 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526988.2 56.6% 51.9% (many diffs)
39 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301709.2 56.3% 56.3% 428_429ins558
40 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527127.2 50.9% 45.9% (many diffs)
41 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027006.2 47.8% 46.1% (many diffs)
42 human 653492 PSG10P pregnancy specific beta-1-g... NR_026824.1 45.4% (many diffs)
43 human 5680 PSG11 pregnancy specific beta-1-g... NM_001113410.2 43.4% 36.8% (many diffs)
44 human 5680 PSG11 pregnancy specific beta-1-g... NM_203287.2 43.4% 36.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1344
ORF length:
1278
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gcccctccca gccccttcct gcacacagcg catcacctgg aaggggctcc
121tgctcacagc atcactttta aacttctgga acccgcccac cactgccgaa gtcacgattg
181aagcccagcc acccaaagtt tctgagggga aggatgttct tctacttgtc cacaatttgc
241cccagaatct tcctggctac ttctggtaca aaggggaaat gacggacctc taccattaca
301ttatatcgta tatagttgat ggtaaaataa ttatatatgg gcctgcatac agtggaagag
361aaacagtata ttccaacgca tccctgctga tccagaatgt cacccggaag gatgcaggaa
421cctacacctt acacatcata aagcgaggtg atgagactag agaagaaatt cgacatttca
481ccttcacctt atacttggag actcccaagc cctacatctc cagcagcaac ttaaacccca
541gggaggccat ggaggctgtg cgcttaatct gtgatcctga gactctggac gcaagctacc
601tatggtggat gaatggtcag agcctccctg tgactcacag gttgcagctg tccaaaacca
661acaggaccct ctatctattt ggtgtcacaa agtatattgc aggaccctat gaatgtgaaa
721tacggaaccc agtgagtgcc agtcgcagtg acccagtcac cctgaatctc ctcccgaagc
781tgcccatccc ctacatcacc atcaacaact taaaccccag ggagaataag gatgtcttag
841ccttcacctg tgaacctaag agtgagaact acacctacat ttggtggcta aacggtcaga
901gcctccccgt cagtcccggg gtaaagcgac ccattgaaaa caggatactc attctaccca
961gtgtcacgag aaatgaaaca ggaccctatc aatgtgaaat acaggaccga tatggtggcc
1021tccgcagtaa cccagtcatc ctaaatgtcc tctatggtcc agacctcccc agaatttacc
1081cttcattcac ctattaccgt tcaggagaaa acctcgactt gtcctgcttc acggaatcta
1141acccaccggc agagtatttt tggacaatta atgggaagtt tcagcaatca ggacaaaagc
1201tctttatccc ccaaattact agaaatcata gcgggctcta tgcttgctct gttcataact
1261cagccactgg caaggaaatc tccaaatcca tgacagtcaa agtctctggt ccctgccatg
1321gagacctgac agagtctcag tcatgcccaa ctttcttgta caaagtggtt ggtaagccta
1381tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1441gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)