Construct: ORF ccsbBroad304_13308
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018451.1_s304c1, BRDN0000407094
- Derived from:
- ccsbBroadEn_13308
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRUNE2 (158471)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13308
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | NM_001308051.1 | 56.4% | 57% | (many diffs) |
2 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014359.2 | 54.5% | 55% | (many diffs) |
3 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | NM_001308049.1 | 53.8% | 54.4% | (many diffs) |
4 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014358.2 | 53.8% | 54.4% | (many diffs) |
5 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014357.2 | 53.8% | 54.4% | (many diffs) |
6 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014356.2 | 52% | 52.5% | (many diffs) |
7 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | NM_001330680.1 | 51.9% | 52.4% | (many diffs) |
8 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | NM_001308050.1 | 51.6% | 52.1% | (many diffs) |
9 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014354.2 | 50.2% | 50.6% | (many diffs) |
10 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XR_001746212.2 | 12.5% | (many diffs) | |
11 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_005251754.2 | 6% | 6% | (many diffs) |
12 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | NM_001308048.1 | 6% | 6% | (many diffs) |
13 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014353.2 | 6% | 6% | (many diffs) |
14 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_011518328.2 | 6% | 6% | (many diffs) |
15 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014351.1 | 6% | 6% | (many diffs) |
16 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_005251751.1 | 6% | 6% | (many diffs) |
17 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014348.1 | 6% | 6% | (many diffs) |
18 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_011518327.1 | 6% | 6% | (many diffs) |
19 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | NM_001308047.1 | 6% | 6% | (many diffs) |
20 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_011518326.2 | 6% | 5.9% | (many diffs) |
21 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_005251750.1 | 6% | 5.9% | (many diffs) |
22 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014352.1 | 6% | 5.9% | (many diffs) |
23 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_011518323.2 | 6% | 5.9% | (many diffs) |
24 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_005251746.1 | 5.9% | 5.9% | (many diffs) |
25 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014350.1 | 5.9% | 5.9% | (many diffs) |
26 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_005251745.1 | 5.9% | 5.9% | (many diffs) |
27 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014349.1 | 5.9% | 5.9% | (many diffs) |
28 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014347.2 | 5.9% | 5.9% | (many diffs) |
29 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_006716984.2 | 5.9% | 5.9% | (many diffs) |
30 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_006716985.1 | 5.9% | 5.9% | (many diffs) |
31 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_006716982.1 | 5.9% | 5.9% | (many diffs) |
32 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014346.1 | 5.9% | 5.9% | (many diffs) |
33 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | NM_015225.3 | 5.9% | 5.9% | (many diffs) |
34 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_005251748.1 | 5.9% | 5.9% | (many diffs) |
35 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_017014345.2 | 5.9% | 5.9% | (many diffs) |
36 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_006716986.1 | 5.9% | 5.9% | (many diffs) |
37 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XM_006716983.1 | 5.9% | 5.9% | (many diffs) |
38 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XR_001746211.2 | 4.3% | (many diffs) | |
39 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XR_001746210.2 | 4.3% | (many diffs) | |
40 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XR_001746209.2 | 4.3% | (many diffs) | |
41 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | XR_428517.3 | 4.3% | (many diffs) | |
42 | human | 158471 | PRUNE2 | prune homolog 2 with BCH do... | NR_131751.1 | 4.1% | (many diffs) | |
43 | mouse | 353211 | Prune2 | prune homolog 2 | XM_006527154.2 | 5.5% | 5.9% | (many diffs) |
44 | mouse | 353211 | Prune2 | prune homolog 2 | XM_006527153.2 | 5.5% | 5.9% | (many diffs) |
45 | mouse | 353211 | Prune2 | prune homolog 2 | XM_017318230.1 | 5.5% | 5.8% | (many diffs) |
46 | mouse | 353211 | Prune2 | prune homolog 2 | XM_006527152.2 | 5.5% | 5.8% | (many diffs) |
47 | mouse | 353211 | Prune2 | prune homolog 2 | XM_006527151.2 | 5.5% | 5.8% | (many diffs) |
48 | mouse | 353211 | Prune2 | prune homolog 2 | XM_006527149.2 | 5.4% | 5.8% | (many diffs) |
49 | mouse | 353211 | Prune2 | prune homolog 2 | XM_017318228.1 | 5.4% | 5.8% | (many diffs) |
50 | mouse | 353211 | Prune2 | prune homolog 2 | XM_017318227.1 | 5.4% | 5.8% | (many diffs) |
51 | mouse | 353211 | Prune2 | prune homolog 2 | XM_006527147.2 | 5.4% | 5.8% | (many diffs) |
52 | mouse | 353211 | Prune2 | prune homolog 2 | XM_006527146.1 | 5.4% | 5.8% | (many diffs) |
53 | mouse | 353211 | Prune2 | prune homolog 2 | NM_181348.4 | 5.4% | 5.8% | (many diffs) |
54 | mouse | 353211 | Prune2 | prune homolog 2 | XM_006527144.2 | 5.4% | 5.8% | (many diffs) |
55 | mouse | 353211 | Prune2 | prune homolog 2 | XM_017318229.1 | 5.4% | 5.8% | (many diffs) |
56 | mouse | 353211 | Prune2 | prune homolog 2 | XM_017318226.1 | 5.4% | 5.8% | (many diffs) |
57 | mouse | 353211 | Prune2 | prune homolog 2 | XM_006527145.1 | 5.4% | 5.7% | (many diffs) |
58 | mouse | 353211 | Prune2 | prune homolog 2 | XR_386485.2 | 3.5% | (many diffs) | |
59 | mouse | 353211 | Prune2 | prune homolog 2 | XR_386484.2 | 3.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 639
- ORF length:
- 573
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga catccccttt gaagagggcg tgctgagtcc cagtgctgca gacatgaggc 121 ctgaacctcc taattctctg gatcttaatg acactcatcc tcggagaatc aagctcacag 181 ccccaaatat caatctttct ctggaccaaa gtgaaggatc tattctctct gatgataact 241 tggacagtcc tgatgaaatt gacatcaatg tggatgaact tgataccccc gatgaagcag 301 attcttttga gtacactggc catgaagatc ccacagccaa caaagattct ggccaagagt 361 cagagtctat tccagaatat acggccgaag aggaacggga ggacaaccgg ctttggagga 421 cagtggtcat tggagaacaa gagcagcgca ttgacatgaa ggtcatcgag ccctacagga 481 gagtcatttc tcacggagga tactatgggg acggtctaaa tgccatcatt gtgtttgccg 541 cctgttttct gccagacagc agtcgggcgg attaccacta tgtcatggaa aatcttttcc 601 tatatgtaat aagtactttc acactacagc cgcagagctg cccaactttc ttgtacaaag 661 tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta 721 gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta