Construct: ORF ccsbBroad304_13380
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017660.1_s304c1, BRDN0000398809
- Derived from:
- ccsbBroadEn_13380
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CC2D1B (200014)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13380
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | XM_017000559.1 | 29% | 29% | 1_1155del |
| 2 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | XM_024453857.1 | 29% | 29% | 1_1155del |
| 3 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | XM_005270593.2 | 28.7% | 28.7% | 1_1173del |
| 4 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | XM_006710423.2 | 19.3% | 19.3% | 1_1974del |
| 5 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | NM_001330585.2 | 18.5% | 18.5% | 1_2082del |
| 6 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | NM_032449.2 | 18.4% | 18.4% | 1_2100del |
| 7 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | XM_005270590.2 | 18.4% | 18.4% | 1_2100del |
| 8 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | XR_001737028.1 | 6.2% | 1_2211del;2558_2647del;2776_7566del | |
| 9 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | XR_001737027.1 | 6.1% | 1_2337del;2684_2773del;2902_7692del | |
| 10 | human | 200014 | CC2D1B | coiled-coil and C2 domain c... | XR_002959657.1 | 5.6% | 1_2319del;2666_3472del;3601_8391del | |
| 11 | mouse | 319965 | Cc2d1b | coiled-coil and C2 domain c... | XM_006503154.2 | 23.6% | 25.2% | (many diffs) |
| 12 | mouse | 319965 | Cc2d1b | coiled-coil and C2 domain c... | XM_006503152.3 | 17.3% | 18.5% | (many diffs) |
| 13 | mouse | 319965 | Cc2d1b | coiled-coil and C2 domain c... | NM_177045.3 | 16.7% | 17.8% | (many diffs) |
| 14 | mouse | 319965 | Cc2d1b | coiled-coil and C2 domain c... | XR_376327.1 | 12.8% | (many diffs) | |
| 15 | mouse | 319965 | Cc2d1b | coiled-coil and C2 domain c... | XR_376326.1 | 12.5% | (many diffs) | |
| 16 | mouse | 319965 | Cc2d1b | coiled-coil and C2 domain c... | XR_376325.2 | 12.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 540
- ORF length:
- 474
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgca tctgatcatt gtccggggaa tgaacctccc agcccctcca ggggtgactc 121 ccgatgacct ggatgctttt gtgcggtttg agtttcacta ccctaactcg gaccaggctc 181 aaaaaagcaa aacagctgtg gtgaagaaca caaactctcc agaatttgat caactcttca 241 aactaaacat caaccgaaac caccggggct tcaagagggt gatccagagc aaaggcatca 301 agtttgagat cttccacaaa gggtccttct tcagaagcga caagctggtt ggcacagcac 361 acctgaaact ggagcggctg gagaatgagt gtgagatcag agaaattgtg gaggtcctgg 421 atggaaggaa gcccaccggg gggaagctgg aggtgaaggt gaggctgcgg gagcctctga 481 gtggccagga tgtgcagatg gtcactgaga actggctggt tctggagccc aggggcttgt 541 gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg 601 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct 661 ggatta