Construct: ORF ccsbBroadEn_02234

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007366.1_s300c1, BRDN0000457307
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHA9 (9752)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9752 PCDHA9 protocadherin alpha 9 NM_031857.1 100% 100%
2 human 56141 PCDHA7 protocadherin alpha 7 NM_018910.3 90% 89.5% (many diffs)
3 human 9752 PCDHA9 protocadherin alpha 9 NM_014005.4 86.5% 83.1% (many diffs)
4 human 56144 PCDHA4 protocadherin alpha 4 NM_018907.4 85.6% 84.4% (many diffs)
5 human 56145 PCDHA3 protocadherin alpha 3 NM_018906.3 82.2% 82.6% (many diffs)
6 human 56136 PCDHA13 protocadherin alpha 13 NM_018904.3 81.7% 80.9% (many diffs)
7 human 56140 PCDHA8 protocadherin alpha 8 NM_018911.3 81.7% 80.3% (many diffs)
8 human 56139 PCDHA10 protocadherin alpha 10 NM_018901.4 81.2% 81.3% (many diffs)
9 human 56138 PCDHA11 protocadherin alpha 11 NM_018902.4 80.9% 79.4% (many diffs)
10 human 56142 PCDHA6 protocadherin alpha 6 NM_018909.4 80.7% 80.2% (many diffs)
11 human 56137 PCDHA12 protocadherin alpha 12 NM_018903.4 80.2% 79.3% (many diffs)
12 human 56141 PCDHA7 protocadherin alpha 7 NM_031852.1 74.3% 73.3% (many diffs)
13 human 56144 PCDHA4 protocadherin alpha 4 NM_031500.3 70.6% 68.4% (many diffs)
14 human 56139 PCDHA10 protocadherin alpha 10 NM_031860.3 59.5% 59.4% (many diffs)
15 human 56142 PCDHA6 protocadherin alpha 6 NM_031849.3 58.6% 57.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2919
ORF length:
2850
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTATACTCA AGTCGAGGAG ATCCAGAGGG TCAGCCTCTA CTGCTCTCGC
121TTCTGATCCT CGCAATGTGG GTGGTGGGGA GCGGCCAGCT CCACTACTCC GTCCCGGAGG
181AAGCCGAACA CGGCACCTTC GTGGGCCGCA TCGCGCAGGA CCTGGGGCTG GAGCTGGCGG
241AGCTGGTGCC GCGCCTGTTC CAGTTGGATT CCAAAGGCCG CGGGGACCTT CTGGAGGTAA
301ATCTGCAGAA TGGCATTTTG TTTGTGAATT CTCGGATCGA CCGCGAGGAG CTGTGCGGGC
361GGAGCGCGGA GTGCAGCATC CACCTGGAGG TGATCGTAGA CAGGCCGCTG CAGGTTTTCC
421ATGTGGACGT GGAGGTGAAG GACATTAACG ACAACCCTCC AGTGTTCCCA GCGACACAAA
481AGAATCTGTT CATCGCGGAA TCCAGGCCGC TTGACTCTCG GTTTCCACTA GAGGGCGCGT
541CCGATGCAGA TATCGGGGAG AACGCCCTGC TCACTTACAG ACTGAGCCCC AATGAGTATT
601TCTTCCTGGA CGTGCCAACC AGCAACCAGC AGGTAAAACC TCTTGGACTT GTATTACGGA
661AACTTTTAGA CAGAGAAGAA ACTCCGGAGC TTCATTTATT GCTCACGGCC ACCGATGGAG
721GCAAACCCGA GCTGACTGGC ACCGTTCAAT TACTCATCAC GGTACTGGAC AACAATGACA
781ATGCCCCAGT GTTCGACAGA ACCCTGTATA CGGTGAAATT ACCAGAAAAC GTTTCTATCG
841GAACGCTGGT GATTCACCCC AATGCCTCAG ATTTAGACGA AGGCTTGAAT GGGGATATTA
901TTTACTCCTT CTCCAGTGAT GTTTCTCCAG ATATAAAATC CAAGTTCCAC ATGGACCCCT
961TAAGTGGGGC AATCACAGTG ATAGGACATA TGGATTTTGA AGAAAGTAGA GCACACAAGA
1021TCCCAGTCGA GGCTGTCGAT AAAGGCTTCC CACCCCTGGC TGGTCATTGT ACACTTCTTG
1081TGGAAGTTGT GGATGTAAAT GACAATGCTC CACAGTTGAC TATCAAAACG CTCTCGGTTC
1141CTGTAAAAGA GGACGCACAA CTGGGGACAG TTATTGCCCT GATTAGTGTG ATCGACCTAG
1201ACGCAGATGC CAACGGGCAG GTTACCTGCT CCCTGACGCC CCACGTCCCC TTCAAGCTGG
1261TGTCCACCTA CAAGAATTAC TACTCGTTGG TGCTGGACAG AGCTCTGGAC CGCGAGAGTG
1321TGTCCGCCTA CGAGCTGGTG GTTACCGCGC GGGACGGGGG CTCGCCTTCA CTGTGGGCCA
1381CGGCCAGGGT GTCTGTGGAG GTGGCCGACG TGAACGACAA CGCACCAGCG TTCGCGCAGT
1441CCGAGTACAC GGTGTTCGTG AAGGAGAACA ACCCGCCGGG CTGCCACATC TTCACGGTGT
1501CTGCGCGGGA CGCTGACGCG CAGGAGAACG CCCTGGTGTC CTACTCGCTG GTGGAGCGGC
1561GGTTGGGCGA GCGCTCGCTG TCGAGCTACG TGTCAGTGCA CGCGGAGAGC GGCAAGGTGT
1621ACGCGCTGCA GCCGTTGGAC CACGAGGAGC TGGAGCTGCT ACAGTTCCAG GTGAGCGCGC
1681GCGACGCGGG CGTGCCGCCT CTGGGCAGCA ACGTGACGCT GCAGGTGTTC GTGCTGGACG
1741AGAACGACAA TGCGCCGGCG CTGCTGACAC CTCGGATGAG GGGCACTGAC GGCGCAGTGA
1801GCGAGATGGT GCTGCGGTCG GTGGGCGCCG GCGTAGTGGT GGGGAAGGTG CGCGCAGTGG
1861ACGCCGACTC GGGCTACAAC GCGTGGCTTT CATACGAGCT GCAGCCAGAA ACGGCCAGCG
1921CGAGCATCCC GTTCCGCGTG GGGCTGTACA CGGGCGAGAT CAGCACAACG CGTGCCCTGG
1981ACGAAACGGA CGCACCGCGC CAGCGCCTAC TGGTGCTGGT GAAAGACCAC GGGGAGCCAG
2041CGCTGACGGC CACGGCCACT GTGCTGGTGT CGCTGGTGGA GAGCGGCCAG GCGCCAAAGT
2101CATCGTCGCG GGCGTCAGTG GGTGCCACGG GCCCCGAGGT GACGCTGGTG GATGTCAACG
2161TGTACCTGAT CATCGCCATC TGCGCGGTGT CTAGCCTGTT GGTTCTCACG CTGCTGCTGT
2221ACACTGTGCT GCGGTGCTCG GCGATGCCCA CCGAGGGCGA GTGCGCGCCT GGCAAGCCGA
2281CGCTGGTGTG TTCTAGCGCG GTGGGGAGTT GGTCGTACTC GCAGCAGAGG AGGCAGAGGG
2341TGTGCTCTGG CGAGGGTAAG CAGAAGACCG ACCTCATGGC CTTCAGCCCG GGCCTTTCTC
2401CTTGTGCTGG ATCTACAGAG CGAACGGGAG AACCCTCTGC TTCCTCAGAT TCAACTGGGA
2461AGCCACGACA GCCCAACCCT GACTGGCGTT ACTCTGCCTC CCTGAGAGCA GGCATGCACA
2521GCTCTGTGCA CCTAGAGGAG GCTGGCATTC TACGGGCTGG TCCAGGAGGG CCTGATCAGC
2581AGTGGCCAAC AGTATCCAGT GCAACACCAG AACCAGAGGC AGGAGAAGTG TCCCCTCCAG
2641TCGGTGCGGG TGTCAACAGC AACAGCTGGA CCTTTAAATA CGGACCAGGC AACCCCAAAC
2701AATCCGGTCC CGGTGAGTTG CCCGACAAAT TCATTATCCC AGGATCTCCT GCAATCATCT
2761CCATCCGGCA GGAGCCTACT AACAGCCAAA TTGACAAAAG TGACTTCATA ACCTTCGGCA
2821AAAAGGAGGA GACCAAGAAA AAGAAGAAAA AGAAGAAGGG TAACAAGACC CAGGAGAAAA
2881AAGAGAAAGG GAACAGCACG ACTGACAACA GTGACCAGTT GCCAACTTTC TTGTACAAAG
2941TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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