Construct: ORF ccsbBroadEn_11168
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018337.1_s300c1, BRDN0000389853
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TACC1 (6867)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352786.2 | 99.8% | 99.8% | (many diffs) |
| 2 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352785.2 | 97.9% | 97.7% | (many diffs) |
| 3 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352784.2 | 96% | 96.3% | (many diffs) |
| 4 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352787.2 | 94.2% | 94% | (many diffs) |
| 5 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352783.2 | 93.5% | 93% | (many diffs) |
| 6 | human | 6867 | TACC1 | transforming acidic coiled-... | XM_005273629.1 | 92.8% | 92.5% | (many diffs) |
| 7 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352782.2 | 92.4% | 92.7% | (many diffs) |
| 8 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352781.2 | 92.1% | 91.6% | (many diffs) |
| 9 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352780.2 | 91.6% | 91.1% | (many diffs) |
| 10 | human | 6867 | TACC1 | transforming acidic coiled-... | XM_005273628.1 | 91% | 91.3% | (many diffs) |
| 11 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_006283.3 | 90.1% | 89.7% | (many diffs) |
| 12 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352779.2 | 88.8% | 88.3% | (many diffs) |
| 13 | human | 6867 | TACC1 | transforming acidic coiled-... | XM_005273625.4 | 88.8% | 88.3% | (many diffs) |
| 14 | human | 6867 | TACC1 | transforming acidic coiled-... | XM_011544632.2 | 88.8% | 88.3% | (many diffs) |
| 15 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352778.2 | 88.4% | 87.9% | (many diffs) |
| 16 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001330521.2 | 79.2% | 79.3% | (many diffs) |
| 17 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352795.2 | 79.2% | 79.3% | (many diffs) |
| 18 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352796.2 | 79.2% | 79.3% | (many diffs) |
| 19 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352797.2 | 79.2% | 79.3% | (many diffs) |
| 20 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352798.1 | 79.2% | 79.3% | (many diffs) |
| 21 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352799.2 | 79.1% | 79.2% | (many diffs) |
| 22 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001146216.3 | 76.2% | 76.3% | (many diffs) |
| 23 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352789.2 | 76.2% | 76.3% | (many diffs) |
| 24 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352790.2 | 76.2% | 76.3% | (many diffs) |
| 25 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352791.1 | 76.2% | 76.3% | (many diffs) |
| 26 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352792.2 | 76.1% | 76.1% | (many diffs) |
| 27 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352793.2 | 76.1% | 76.1% | (many diffs) |
| 28 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352794.2 | 76.1% | 76.1% | (many diffs) |
| 29 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352788.2 | 75% | 75.1% | (many diffs) |
| 30 | human | 6867 | TACC1 | transforming acidic coiled-... | XM_011544635.1 | 75% | 75.1% | (many diffs) |
| 31 | human | 6867 | TACC1 | transforming acidic coiled-... | NR_148050.2 | 65.7% | (many diffs) | |
| 32 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352800.2 | 64.5% | 62.2% | (many diffs) |
| 33 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352802.1 | 48.6% | 46.6% | (many diffs) |
| 34 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352801.2 | 47.8% | 43.8% | (many diffs) |
| 35 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352803.2 | 46.8% | 42.8% | (many diffs) |
| 36 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001352804.2 | 45.3% | 43.5% | (many diffs) |
| 37 | human | 6867 | TACC1 | transforming acidic coiled-... | NM_001122824.2 | 45% | 41.2% | (many diffs) |
| 38 | human | 6867 | TACC1 | transforming acidic coiled-... | XM_011544636.2 | 43.6% | 41.9% | (many diffs) |
| 39 | human | 6867 | TACC1 | transforming acidic coiled-... | NR_148049.2 | 14% | (many diffs) | |
| 40 | human | 6867 | TACC1 | transforming acidic coiled-... | NR_148051.2 | 13.8% | (many diffs) | |
| 41 | mouse | 320165 | Tacc1 | transforming, acidic coiled... | XM_006509147.3 | 38% | 39.5% | (many diffs) |
| 42 | mouse | 320165 | Tacc1 | transforming, acidic coiled... | XM_006509146.3 | 37.8% | 39.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2259
- ORF length:
- 2193
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TAATATATTG AAACTTAAAA GCTCGGATTC TGAAGGTAAT TTTGAGACTC 121 CTGAAGCTGA AACCCCGATC CGATCACCTT TCAAGGAGTC CTGTGATCCA TCACTCGGAT 181 TGGCAGGACC TGGGGCCAAA AGCCAAGAAT CACAAGAAGC TGATGAACAG CTTGTAGCAG 241 AAGTGGTTGA AAAATGTTCA TCTAAGACTT GTTCTAAACC TTCAGAAAAT GAAGTGCCAC 301 AGCAGGCCAT TGACTCTCAC TCAGTCAAGA ATTTCAGAGA AGAACCTGAA CATGATTTTA 361 GCAAAATTTC CATCGTGAGG CCATTTTCAA TAGAAACGAA GGATTCCACG GATATCTCGG 421 CAGTCCTCGG AACAAAAGCA GCTCATGGCT GTGTAACTGC AGTCTCAGGC AAGGCTCTGC 481 CTTCCAGCCC GCCAGACGCC CTCCAGGACG AGGCGATGAC GGAAGGCAGC ATGGGGGTCA 541 CCCTCGAGGC CTCCGCAGAA GCTGATCTAA AAGCTGGCAA CTCCTGTCCA GAGCTTGTGC 601 CCAGCAGAAG AAGCAAGCTG AGAAAGCCCA AGCCTGTCCC CCTGAGGAAG AAAGCAATTG 661 GAGGAGAGTT CTCAGACACC AACGCTGCTG TGGAGGGCAC ACCTCTCCCC AAGGCATCCT 721 ATCACTTCAG TCCTGAAGAG TTGGATGAGA ACACAAGTCC TTTGCTAGGA GATGCCAGGT 781 TCCAGAAGTC TCCCCCTGAC CTTAAAGAAA CTCCCGGCAC TCTCAGTAGT GACACCAACG 841 ACTCAGGGGT TGAGCTGGGG GAGGAGTCGA GGAGCTCACC TCTCAAGCTT GAGTTTGATT 901 TCACAGAAGA TACAGGAAAC ATAGAGGCCA GGAAAGCCCT TCCAAGGAAG CTTGGCAGGA 961 AACTGGGTAG CACACTGACT CCCAAGATAC AAAAAGATGG CATCAGTAAG TCAGCAGGTT 1021 TAGAACAGCC TACAGACCCA GTGGCACGAG ACGGGCCTCT CTCCCAAACA TCTTCCAAGC 1081 CAGATCCTAG TCAGTGGGAG AGCCCCAGCT TCAACCCCTT TGGGAGCCAC TCTGTTCTGC 1141 AGAACTCCCC ACCCCTCTCT TCTGAGGGCT CCTACCACTT TGACCCAGAT AACTTTGACG 1201 AATCCATGGA TCACTTTAAA CCAACTACGA CCTTAACAAG CAGTGACTTT TGTTCTCCCA 1261 CTGGTAATCA CGTTAATGAA ATCTTAGAAT CACCCAAGAA GGCAAAGTCG CGTTTAATAA 1321 CGAGTGGCTG TAAGGTGAAG AAGCATGAAA CTCAGTCTCT CGCCCTGGAT GCATGTTCTC 1381 GGGATGAAGG GGCAGTGATC TCCCAGATTT CAGACATTTC TAATAGGGAT GGCCATGCTA 1441 CTGATGAGGA GAAACTGGCA TCCACGTCAT GTGGTCAGAA ATCAGCTGGT GCCGAGGTGA 1501 AAGGCATAGA GAAGGAGACG TGCCAGAAGA TGGAAGAAGA CGGGTCCACT GTGCTTGGGC 1561 TGCTGGAGTC CTCTGCAGAG AAGGCCCCTG TGTCGGTGTC CTGTGGAGGT GAGAGCCCCC 1621 TGGATGGGAT CTGCCTCAGC GAATCAGACA AGACAGCCGT GCTCACCTTA ATAAGAGAAG 1681 AGATAATTAC CAAAGAGATT GAAGCAAATG AATGGAAGAA GAAATACGAA GAGACCCGGC 1741 AAGAAGTTTT GGAGATGAGG AAAATTGTAG CTGAATATGA AAAGACTATT GCTCAAATGA 1801 TTGAAGATGA ACAAAGGACA AGTATGACCT CTCAGAAGAG CTTCCAGCAA CTGACCATGG 1861 AGAAGGAACA GGCCCTGGCT GACCTTAACT CTGTGGAAAG GTCCCTTTCT GATCTCTTCA 1921 GGAGATATGA GAACCTGAAA GGTGTTCTGG AAGGGTTCAA GAAGAATGAA GAAGCCTTGA 1981 AGAAATGTGC TCAGGATTAC TTAGCCAGAG TTAAACAAGA GGAGCAGCGA TACCAGGCCC 2041 TGAAAATCCA CGCAGAAGAG AAACTGGACA AAGCCAATGA AGAGATTGCT CAGGTTCGAA 2101 CAAAAGCAAA GGCTGAGAGT GCAGCTCTCC ATGCTGGACT CCGCAAAGAG CAGATGAAGG 2161 TGGAGTCCCT GGAAAGGGCC CTGCAGCAGA AGAACCAAGA AATTGAAGAA CTGACAAAAA 2221 TCTGTGATGA GCTGATTGCA AAGCTGGGAA AGACTGACTG CCCAACTTTC TTGTACAAAG 2281 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac