Construct: ORF ccsbBroadEn_11930
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017414.1_s300c1, BRDN0000394120
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HP1BP3 (50809)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | NM_001372052.1 | 23.2% | 20.9% | (many diffs) |
| 2 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | NM_016287.5 | 23.2% | 20.9% | (many diffs) |
| 3 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_005245876.3 | 23.2% | 20.9% | (many diffs) |
| 4 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_005245877.5 | 23.2% | 20.9% | (many diffs) |
| 5 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_005245878.5 | 23.2% | 20.9% | (many diffs) |
| 6 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_017001393.1 | 23.2% | 20.9% | (many diffs) |
| 7 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_005245879.4 | 16.3% | 14.2% | (many diffs) |
| 8 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_011541532.1 | 16.3% | 14.2% | (many diffs) |
| 9 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_011541533.1 | 16.3% | 14.2% | (many diffs) |
| 10 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_011541534.2 | 16.3% | 14.2% | (many diffs) |
| 11 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_017001394.1 | 16.3% | 14.2% | (many diffs) |
| 12 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XR_001737207.1 | 8.4% | (many diffs) | |
| 13 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XR_001737206.2 | 8.4% | (many diffs) | |
| 14 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001285479.1 | 20.2% | 19% | (many diffs) |
| 15 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001122897.2 | 20.1% | 18.9% | (many diffs) |
| 16 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001285478.1 | 20.1% | 18.9% | (many diffs) |
| 17 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_010470.3 | 20.1% | 18.9% | (many diffs) |
| 18 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_006538568.4 | 20.1% | 18.9% | (many diffs) |
| 19 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253219.1 | 18.1% | 17% | (many diffs) |
| 20 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001285481.1 | 18.1% | 17% | (many diffs) |
| 21 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253218.1 | 18.1% | 17% | (many diffs) |
| 22 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253223.1 | 13.8% | 12.9% | (many diffs) |
| 23 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001122896.2 | 13.8% | 12.9% | (many diffs) |
| 24 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001356432.1 | 13.8% | 12.9% | (many diffs) |
| 25 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_006538570.3 | 13.8% | 12.9% | (many diffs) |
| 26 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253220.1 | 13.8% | 12.9% | (many diffs) |
| 27 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253221.1 | 13.8% | 12.9% | (many diffs) |
| 28 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253222.1 | 13.8% | 12.9% | (many diffs) |
| 29 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001356431.1 | 11.8% | 11% | (many diffs) |
| 30 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001285480.1 | 11.8% | 10.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 465
- ORF length:
- 399
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GACTGATACG TCTCAAGGTG AACTCGTCCA TCCTAAGGCA CTCCCACTTA 121 TAGTAGGAGC TCAGCTGATC CACGCGGACA AGTTAGGTGA GAAGGTAGAA GATAGCACCA 181 TGCCGATTCG TCGAACTGTG AATTCTACCC GGGAAACTCC TCCCAAAAGC AAGCTTGCTG 241 AAGGGGAGGA AGAAAAGCCA GAACCAGACA TAAGTTCAGA GGAATCTGTC TCCACTGTAG 301 AAGAACAAGA GAATGAAACT CCACCTGCTA CTTCGAGTGA GGCAGAGCAG CCAAAGGGGG 361 AACCTGAGAA TGAAGAGAAG GAAGAAAATA AGTCTTCTGA GGAAACCAAA AAGGAGAGAG 421 CTGATAGTAT TCATTCCACT CTTTTCATAA TTGGTCAGAA CAGTTACCCA ACTTTCTTGT 481 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c