Construct: ORF ccsbBroadEn_14621

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018948.1_s300c1, BRDN0000458244
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
DYRK1A (1859)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1859 DYRK1A dual specificity tyrosine p... NM_001347721.2 98.1% 33.2% (many diffs)
2 human 1859 DYRK1A dual specificity tyrosine p... NM_001347722.2 98.1% 33.2% (many diffs)
3 human 1859 DYRK1A dual specificity tyrosine p... NM_130436.2 98.1% 33.2% (many diffs)
4 human 1859 DYRK1A dual specificity tyrosine p... XM_017028284.1 98.1% 33.2% (many diffs)
5 human 1859 DYRK1A dual specificity tyrosine p... NM_001396.4 96.9% 32.8% (many diffs)
6 human 1859 DYRK1A dual specificity tyrosine p... XM_006723976.3 96.9% 32.8% (many diffs)
7 human 1859 DYRK1A dual specificity tyrosine p... XM_006723977.3 96.9% 32.8% (many diffs)
8 human 1859 DYRK1A dual specificity tyrosine p... XM_006723978.3 96.9% 32.8% (many diffs)
9 human 1859 DYRK1A dual specificity tyrosine p... XM_011529483.2 96.9% 32.8% (many diffs)
10 human 1859 DYRK1A dual specificity tyrosine p... NM_001347723.1 94.2% 29.3% (many diffs)
11 human 1859 DYRK1A dual specificity tyrosine p... XM_024452057.1 94.2% 29.3% (many diffs)
12 human 1859 DYRK1A dual specificity tyrosine p... XM_017028286.2 93.1% 29% (many diffs)
13 human 1859 DYRK1A dual specificity tyrosine p... NM_101395.2 72.1% 42.8% (many diffs)
14 human 1859 DYRK1A dual specificity tyrosine p... XM_005260933.5 69.2% 4.2% (many diffs)
15 human 1859 DYRK1A dual specificity tyrosine p... NM_130438.2 67.6% 47.2% (many diffs)
16 mouse 13548 Dyrk1a dual-specificity tyrosine-(... NM_001347731.1 91.8% 32.8% (many diffs)
17 mouse 13548 Dyrk1a dual-specificity tyrosine-(... XM_011246096.2 91.8% 32.8% (many diffs)
18 mouse 13548 Dyrk1a dual-specificity tyrosine-(... NM_001113389.1 90.7% 32.4% (many diffs)
19 mouse 13548 Dyrk1a dual-specificity tyrosine-(... NM_007890.2 90.7% 32.4% (many diffs)
20 mouse 13548 Dyrk1a dual-specificity tyrosine-(... XM_011246094.2 90.7% 32.4% (many diffs)
21 mouse 13548 Dyrk1a dual-specificity tyrosine-(... XM_011246095.2 90.7% 32.4% (many diffs)
22 mouse 13548 Dyrk1a dual-specificity tyrosine-(... XM_011246099.2 88.1% 28.9% (many diffs)
23 mouse 13548 Dyrk1a dual-specificity tyrosine-(... XM_011246098.2 87.1% 28.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
82
ORF end:
898
ORF length:
816
Sequence:
1CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT AATGCCAACT
61TTGTACAAAA AAGTTGGCAC CATGCATACA GGAGGAGAGA CTTCAGCATG CAAACCTTCA
121TCTGTTCGGC TTGCACCGTC ATTTTCATTC CATGCTGCTG GCCTTCAGAT GGCTGGACAG
181ATGCCCCATT CACATCAGTA CAGTGACCGT CGCCAGCCAA ACATAAGTGA CCAACAGGTT
241TCTGCCTTAT CATATTCTGA CCAGATTCAG CAACCTCTAA CTAACCAGAG GCGGATGCCC
301CAAACCTTCC GTGACCCAGC AACTGCTCCC CTGAGAAAAC TTTCTGTTGA CTTGATCAAA
361ACATACAAGC ATATTAATGA GGTTTACTAT GCAAAAAAGA AGCGAAGACA CCAACAGGGC
421CAGGGAGACG ATTCTAGTCA TAAGAAGGAA CGGAAGGTTT ACAATGATGG TTATGATGAT
481GATAACTATG ATTATATTGT AAAAAACGGA GAAAAGTGGA TGGATCGTTA CGAAATTGAC
541TCCTTGATAG GCAAAGGTTC CTTTGGACAG GTTGTAAAGG CATATGATCG TGTGGAGCAA
601GAATGGGTTG CCATTAAAAT AATAAAGAAC AAGAAAGCTT TTCTGAATCA AGCACAGATA
661GAAGTGCGAC TTCTTGAGCT CATGAACAAA CATGACACTG AAATGAAATA CTACATAGTG
721CATTTGAAAC GCCACTTTAT GTTTCGAAAC CATCTCTGTT TAGTTTTTGA AATGCTGTCC
781TACAACCTCT ATGACTTGCT GAGAAAACAC CAATTTCCga ggggtctctt tgaacctaac
841acgaaagttt gcgcaacaga tgtgcactgc actgcttttc cttgcgactc cagaacttag
901tatcattcac tgtgatctaa aacctgaaaa tatccttctt tgtaacccca aacgcagtgc
961aatcaagata gttgactttg gcagttcttg tcagttgggg cagaggatat accagtatat
1021tcagagtcgc ttttatcggt ctccagaggt gctactggga atgccttatg accttgccat
1081tgatatgtgg tccctcgggt gtattttggt tgaaatgcac actggagaac ctctgttcag
1141tggtgccaat gaggtagatc agatgaataa aatagtggaa gttctgggta ttccacctgc
1201tcatattctt gaccaagcac caaaagcaag aaagttcttt gagaagttgc cagatggcac
1261ttggaactta aagaagacca aagatggaaa acgggagtac aaaccaccag gaacccgtaa
1321acttcataac attcttggag tggaaacagg aggacctggt gggcgacgtg ctggggagtc
1381aggtcatacg gtcgctgact acttgaagtt caaagacctc attttaagga tgcttgatta
1441tgaccccaaa actcgaattc aaccttatta tgctctgcag cacagtttct tcaagaaaac
1501agctgatgaa ggtacaaata caagtaatag tgtatctaca agccccgcca tggagcagtc
1561tcagtcttcg ggcaccacct ccagtacatc gTCAAGCTTC ATGATCACTC ATCAGGTGTC
1621AAGACATCAG TTGGAGGAGC ACGGTCGGAT CAGGACGCAC CAGCATCGGC ACATTGGCGG
1681GCATTATCTT CAACTGCTGT GTCATGTCAT GGACTGCGAG ACACACAGTC CGGCAGGTGC
1741GTCAGCAATT TCCTGCTCGT CTTGGTGGAT CAGGCACTGA AGCTCCTACA CAGGTCAGTG
1801ATGAAACTCA TCCTCTCAAG AAACAACCAT TCATGTAGCC CCTCAACAGA ATGCATCAAA
1861TCATCACCAT GGTAACAGTT CCCATCACCA TCACCACCAC CACCACCATC ACCACCACCA
1921TGGACAACAA GCCTTGGGTA ACCGGACCAG GCCAAGGGTC TACAATTCTC CAACGAATAG
1981CTCCTCTACC CAAGATTCTA TGGAGGTTGG CCACAGTCAC CACTCCATGA CATCCCTGTC
2041TTCCTCAACG ACTTCTTCCT CGACATCTTC CTCCTCTACT GGTAACCAAG GCAATCAGGC
2101CTACCAGAAT CGCCCAGTGG CTGCTAATAC CTTGGACTTT GGACAGAATG GAGCTATGGA
2161CGTTAATTTG ACCGTCTACT CCAATCCCCG CCAAGAGACT GGCATAGCTG GACATCCAAC
2221ATACCAATTT TCTGCTAATA CAGGTCCTGC ACATTACATG ACTGAAGGAC ATCTGACAAT
2281GAGGCAAGGG GCTGATAGAG AAGAGTCCCC CATGACAGGA GTTTGTGTGC AACAGAGTCC
2341TGTAGCTAGC TCGTTGCCAA CTTTCTTGTA CAAAGTTGGC ATTATAAGAA AGCATTGCTT
2401ATCAATTTGT TGCAACGAAC AGGTCACTAT CAGTCAAAAT AAAATCATTA TTGCCATCCA
2461GCGTTCCACT C

Download FASTA (ORF) (Full)

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