Construct: ORF ccsbBroadEn_14621
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018948.1_s300c1, BRDN0000458244
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- DYRK1A (1859)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1859 | DYRK1A | dual specificity tyrosine p... | NM_001347721.2 | 98.1% | 33.2% | (many diffs) |
| 2 | human | 1859 | DYRK1A | dual specificity tyrosine p... | NM_001347722.2 | 98.1% | 33.2% | (many diffs) |
| 3 | human | 1859 | DYRK1A | dual specificity tyrosine p... | NM_130436.2 | 98.1% | 33.2% | (many diffs) |
| 4 | human | 1859 | DYRK1A | dual specificity tyrosine p... | XM_017028284.1 | 98.1% | 33.2% | (many diffs) |
| 5 | human | 1859 | DYRK1A | dual specificity tyrosine p... | NM_001396.4 | 96.9% | 32.8% | (many diffs) |
| 6 | human | 1859 | DYRK1A | dual specificity tyrosine p... | XM_006723976.3 | 96.9% | 32.8% | (many diffs) |
| 7 | human | 1859 | DYRK1A | dual specificity tyrosine p... | XM_006723977.3 | 96.9% | 32.8% | (many diffs) |
| 8 | human | 1859 | DYRK1A | dual specificity tyrosine p... | XM_006723978.3 | 96.9% | 32.8% | (many diffs) |
| 9 | human | 1859 | DYRK1A | dual specificity tyrosine p... | XM_011529483.2 | 96.9% | 32.8% | (many diffs) |
| 10 | human | 1859 | DYRK1A | dual specificity tyrosine p... | NM_001347723.1 | 94.2% | 29.3% | (many diffs) |
| 11 | human | 1859 | DYRK1A | dual specificity tyrosine p... | XM_024452057.1 | 94.2% | 29.3% | (many diffs) |
| 12 | human | 1859 | DYRK1A | dual specificity tyrosine p... | XM_017028286.2 | 93.1% | 29% | (many diffs) |
| 13 | human | 1859 | DYRK1A | dual specificity tyrosine p... | NM_101395.2 | 72.1% | 42.8% | (many diffs) |
| 14 | human | 1859 | DYRK1A | dual specificity tyrosine p... | XM_005260933.5 | 69.2% | 4.2% | (many diffs) |
| 15 | human | 1859 | DYRK1A | dual specificity tyrosine p... | NM_130438.2 | 67.6% | 47.2% | (many diffs) |
| 16 | mouse | 13548 | Dyrk1a | dual-specificity tyrosine-(... | NM_001347731.1 | 91.8% | 32.8% | (many diffs) |
| 17 | mouse | 13548 | Dyrk1a | dual-specificity tyrosine-(... | XM_011246096.2 | 91.8% | 32.8% | (many diffs) |
| 18 | mouse | 13548 | Dyrk1a | dual-specificity tyrosine-(... | NM_001113389.1 | 90.7% | 32.4% | (many diffs) |
| 19 | mouse | 13548 | Dyrk1a | dual-specificity tyrosine-(... | NM_007890.2 | 90.7% | 32.4% | (many diffs) |
| 20 | mouse | 13548 | Dyrk1a | dual-specificity tyrosine-(... | XM_011246094.2 | 90.7% | 32.4% | (many diffs) |
| 21 | mouse | 13548 | Dyrk1a | dual-specificity tyrosine-(... | XM_011246095.2 | 90.7% | 32.4% | (many diffs) |
| 22 | mouse | 13548 | Dyrk1a | dual-specificity tyrosine-(... | XM_011246099.2 | 88.1% | 28.9% | (many diffs) |
| 23 | mouse | 13548 | Dyrk1a | dual-specificity tyrosine-(... | XM_011246098.2 | 87.1% | 28.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 82
- ORF end:
- 898
- ORF length:
- 816
- Sequence:
-
1 CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT AATGCCAACT 61 TTGTACAAAA AAGTTGGCAC CATGCATACA GGAGGAGAGA CTTCAGCATG CAAACCTTCA 121 TCTGTTCGGC TTGCACCGTC ATTTTCATTC CATGCTGCTG GCCTTCAGAT GGCTGGACAG 181 ATGCCCCATT CACATCAGTA CAGTGACCGT CGCCAGCCAA ACATAAGTGA CCAACAGGTT 241 TCTGCCTTAT CATATTCTGA CCAGATTCAG CAACCTCTAA CTAACCAGAG GCGGATGCCC 301 CAAACCTTCC GTGACCCAGC AACTGCTCCC CTGAGAAAAC TTTCTGTTGA CTTGATCAAA 361 ACATACAAGC ATATTAATGA GGTTTACTAT GCAAAAAAGA AGCGAAGACA CCAACAGGGC 421 CAGGGAGACG ATTCTAGTCA TAAGAAGGAA CGGAAGGTTT ACAATGATGG TTATGATGAT 481 GATAACTATG ATTATATTGT AAAAAACGGA GAAAAGTGGA TGGATCGTTA CGAAATTGAC 541 TCCTTGATAG GCAAAGGTTC CTTTGGACAG GTTGTAAAGG CATATGATCG TGTGGAGCAA 601 GAATGGGTTG CCATTAAAAT AATAAAGAAC AAGAAAGCTT TTCTGAATCA AGCACAGATA 661 GAAGTGCGAC TTCTTGAGCT CATGAACAAA CATGACACTG AAATGAAATA CTACATAGTG 721 CATTTGAAAC GCCACTTTAT GTTTCGAAAC CATCTCTGTT TAGTTTTTGA AATGCTGTCC 781 TACAACCTCT ATGACTTGCT GAGAAAACAC CAATTTCCga ggggtctctt tgaacctaac 841 acgaaagttt gcgcaacaga tgtgcactgc actgcttttc cttgcgactc cagaacttag 901 tatcattcac tgtgatctaa aacctgaaaa tatccttctt tgtaacccca aacgcagtgc 961 aatcaagata gttgactttg gcagttcttg tcagttgggg cagaggatat accagtatat 1021 tcagagtcgc ttttatcggt ctccagaggt gctactggga atgccttatg accttgccat 1081 tgatatgtgg tccctcgggt gtattttggt tgaaatgcac actggagaac ctctgttcag 1141 tggtgccaat gaggtagatc agatgaataa aatagtggaa gttctgggta ttccacctgc 1201 tcatattctt gaccaagcac caaaagcaag aaagttcttt gagaagttgc cagatggcac 1261 ttggaactta aagaagacca aagatggaaa acgggagtac aaaccaccag gaacccgtaa 1321 acttcataac attcttggag tggaaacagg aggacctggt gggcgacgtg ctggggagtc 1381 aggtcatacg gtcgctgact acttgaagtt caaagacctc attttaagga tgcttgatta 1441 tgaccccaaa actcgaattc aaccttatta tgctctgcag cacagtttct tcaagaaaac 1501 agctgatgaa ggtacaaata caagtaatag tgtatctaca agccccgcca tggagcagtc 1561 tcagtcttcg ggcaccacct ccagtacatc gTCAAGCTTC ATGATCACTC ATCAGGTGTC 1621 AAGACATCAG TTGGAGGAGC ACGGTCGGAT CAGGACGCAC CAGCATCGGC ACATTGGCGG 1681 GCATTATCTT CAACTGCTGT GTCATGTCAT GGACTGCGAG ACACACAGTC CGGCAGGTGC 1741 GTCAGCAATT TCCTGCTCGT CTTGGTGGAT CAGGCACTGA AGCTCCTACA CAGGTCAGTG 1801 ATGAAACTCA TCCTCTCAAG AAACAACCAT TCATGTAGCC CCTCAACAGA ATGCATCAAA 1861 TCATCACCAT GGTAACAGTT CCCATCACCA TCACCACCAC CACCACCATC ACCACCACCA 1921 TGGACAACAA GCCTTGGGTA ACCGGACCAG GCCAAGGGTC TACAATTCTC CAACGAATAG 1981 CTCCTCTACC CAAGATTCTA TGGAGGTTGG CCACAGTCAC CACTCCATGA CATCCCTGTC 2041 TTCCTCAACG ACTTCTTCCT CGACATCTTC CTCCTCTACT GGTAACCAAG GCAATCAGGC 2101 CTACCAGAAT CGCCCAGTGG CTGCTAATAC CTTGGACTTT GGACAGAATG GAGCTATGGA 2161 CGTTAATTTG ACCGTCTACT CCAATCCCCG CCAAGAGACT GGCATAGCTG GACATCCAAC 2221 ATACCAATTT TCTGCTAATA CAGGTCCTGC ACATTACATG ACTGAAGGAC ATCTGACAAT 2281 GAGGCAAGGG GCTGATAGAG AAGAGTCCCC CATGACAGGA GTTTGTGTGC AACAGAGTCC 2341 TGTAGCTAGC TCGTTGCCAA CTTTCTTGTA CAAAGTTGGC ATTATAAGAA AGCATTGCTT 2401 ATCAATTTGT TGCAACGAAC AGGTCACTAT CAGTCAAAAT AAAATCATTA TTGCCATCCA 2461 GCGTTCCACT C