Transcript: Human XR_001755163.1

PREDICTED: Homo sapiens transport and golgi organization 2 homolog (TANGO2), transcript variant X13, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TANGO2 (128989)
Length:
2395
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001755163.1
NBCI Gene record:
TANGO2 (128989)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001755163.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437386 GGTTTGCGTGTTACCCATCTG pLKO_005 1267 3UTR 100% 4.050 3.240 N TANGO2 n/a
2 TRCN0000149830 CGTCATTTGCTACTATGGGAA pLKO.1 517 3UTR 100% 2.640 2.112 N TANGO2 n/a
3 TRCN0000413591 CAGTTCAGGGTCTGCCTTTAT pLKO_005 1300 3UTR 100% 13.200 9.240 N TANGO2 n/a
4 TRCN0000149426 CTACCTGAAGAAGGTCTCTAT pLKO.1 433 3UTR 100% 4.950 3.465 N TANGO2 n/a
5 TRCN0000432420 CTTCACTGAGCGTAGCATGAT pLKO_005 1053 3UTR 100% 4.950 3.465 N TANGO2 n/a
6 TRCN0000130981 CCTCCTGATTAGCTGGGATTA pLKO.1 1930 3UTR 100% 10.800 5.400 Y TANGO2 n/a
7 TRCN0000148576 CCTGGATGTGCTCAACAATAA pLKO.1 700 3UTR 100% 13.200 9.240 N TANGO2 n/a
8 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2066 3UTR 100% 5.625 2.813 Y KLHL30 n/a
9 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2066 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001755163.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09518 pDONR223 100% 33.3% None (many diffs) n/a
2 ccsbBroad304_09518 pLX_304 0% 33.3% V5 (many diffs) n/a
3 TRCN0000468437 GCGTGCATTCACTTTCTGTTACAG pLX_317 48.1% 33.3% V5 (many diffs) n/a
4 ccsbBroadEn_13781 pDONR223 100% 10.1% None (many diffs) n/a
5 ccsbBroad304_13781 pLX_304 0% 10.1% V5 (many diffs) n/a
6 TRCN0000469746 TCCCTGCGCCGTCCGGGTTTTCGA pLX_317 100% 10.1% V5 (many diffs) n/a
7 ccsbBroadEn_10792 pDONR223 100% 8.9% None (many diffs) n/a
8 ccsbBroad304_10792 pLX_304 0% 8.9% V5 (many diffs) n/a
9 TRCN0000472287 GCCTGGAGAGCTTTCCTCGTCACG pLX_317 100% 8.9% V5 (many diffs) n/a
10 ccsbBroadEn_12783 pDONR223 100% 7.8% None (many diffs) n/a
11 ccsbBroad304_12783 pLX_304 0% 7.8% V5 (many diffs) n/a
12 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 7.8% V5 (many diffs) n/a
13 ccsbBroadEn_11616 pDONR223 100% 7% None (many diffs) n/a
14 ccsbBroad304_11616 pLX_304 0% 7% V5 (many diffs) n/a
15 TRCN0000467678 CCTCCCCTCACACCTCGTCAAAAC pLX_317 100% 7% V5 (many diffs) n/a
16 ccsbBroadEn_15487 pDONR223 0% 6.8% None (many diffs) n/a
17 ccsbBroad304_15487 pLX_304 0% 6.8% V5 (many diffs) n/a
18 TRCN0000473708 TAGCATCGTTGCACGCGCACGTTG pLX_317 100% 6.8% V5 (many diffs) n/a
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