Construct: ORF ccsbBroadEn_09518
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018525.1_s300c1, BRDN0000386897
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TANGO2 (128989)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283106.2 | 99.7% | 99.2% | 373G>A;598G>A |
| 2 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283116.2 | 99.7% | 99.2% | 373G>A;598G>A |
| 3 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_152906.7 | 99.7% | 99.2% | 373G>A;598G>A |
| 4 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283148.2 | 91% | 71% | (many diffs) |
| 5 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283154.2 | 91% | 71% | (many diffs) |
| 6 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322142.1 | 83.9% | 83.5% | 373G>A;598G>A;710_865del |
| 7 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028577.1 | 83.9% | 83.5% | 373G>A;598G>A;710_865del |
| 8 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028578.1 | 83.9% | 83.5% | 373G>A;598G>A;710_865del |
| 9 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028579.1 | 83.9% | 83.5% | 373G>A;598G>A;710_865del |
| 10 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028580.1 | 83.9% | 83.5% | 373G>A;598G>A;710_865del |
| 11 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283129.2 | 83.1% | 80.5% | (many diffs) |
| 12 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322143.1 | 83.1% | 80.5% | (many diffs) |
| 13 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283179.2 | 77.4% | 77.1% | 263_264ins186;412G>A |
| 14 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283186.2 | 77.4% | 77.1% | 263_264ins186;412G>A |
| 15 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322163.1 | 77.4% | 77.1% | 263_264ins186;412G>A |
| 16 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322166.1 | 77.4% | 77.1% | 263_264ins186;412G>A |
| 17 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322167.1 | 77.4% | 77.1% | 263_264ins186;412G>A |
| 18 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322144.1 | 75.7% | 56.9% | (many diffs) |
| 19 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283199.2 | 72.7% | 72.1% | 373G>A;380_381ins225 |
| 20 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322141.1 | 71.6% | 69.2% | (many diffs) |
| 21 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322148.1 | 71.4% | 65.2% | (many diffs) |
| 22 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028587.1 | 71.4% | 65.2% | (many diffs) |
| 23 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322169.1 | 68.7% | 50.3% | (many diffs) |
| 24 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028585.1 | 65.1% | 64.9% | 263_264ins186;412G>A;524_679del |
| 25 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028586.1 | 65.1% | 64.9% | 263_264ins186;412G>A;524_679del |
| 26 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283235.2 | 64.3% | 53.1% | 0_1ins179;83_84ins115;304G>A |
| 27 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322171.1 | 64.3% | 53.1% | 0_1ins179;83_84ins115;304G>A |
| 28 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322172.1 | 64.3% | 53.1% | 0_1ins179;83_84ins115;304G>A |
| 29 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322173.1 | 64.3% | 53.1% | 0_1ins179;83_84ins115;304G>A |
| 30 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322174.1 | 64.3% | 53.1% | 0_1ins179;83_84ins115;304G>A |
| 31 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322175.1 | 64.3% | 53.1% | 0_1ins179;83_84ins115;304G>A |
| 32 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_011529867.1 | 64.3% | 53.1% | 0_1ins179;83_84ins115;304G>A |
| 33 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_024452157.1 | 64.3% | 53.1% | 0_1ins179;83_84ins115;304G>A |
| 34 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322145.1 | 64% | 61.4% | (many diffs) |
| 35 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322147.1 | 64% | 61.4% | (many diffs) |
| 36 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322160.1 | 63.5% | 41.2% | (many diffs) |
| 37 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_011529863.1 | 63.5% | 41.2% | (many diffs) |
| 38 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028588.2 | 61.1% | 54.2% | 373G>A;451_452ins154;507_508ins167 |
| 39 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322146.1 | 60.9% | 55.6% | (many diffs) |
| 40 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028581.1 | 60.9% | 55.6% | (many diffs) |
| 41 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028582.1 | 60.9% | 55.6% | (many diffs) |
| 42 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028583.1 | 60.9% | 55.6% | (many diffs) |
| 43 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_017028584.1 | 60.9% | 55.6% | (many diffs) |
| 44 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322149.1 | 59.9% | 57% | (many diffs) |
| 45 | human | 128989 | TANGO2 | transport and golgi organiz... | XM_011529865.1 | 54.6% | 45.8% | (many diffs) |
| 46 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322150.1 | 54.1% | 45% | (many diffs) |
| 47 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322153.1 | 54.1% | 45% | (many diffs) |
| 48 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001322155.1 | 54.1% | 45% | (many diffs) |
| 49 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283215.2 | 45.7% | 42.3% | (many diffs) |
| 50 | human | 128989 | TANGO2 | transport and golgi organiz... | NM_001283248.2 | 38.7% | 33.6% | 265_266ins340;321_322ins167 |
| 51 | human | 128989 | TANGO2 | transport and golgi organiz... | XR_002958662.1 | 37.8% | (many diffs) | |
| 52 | human | 128989 | TANGO2 | transport and golgi organiz... | XR_001755162.1 | 35.6% | (many diffs) | |
| 53 | human | 128989 | TANGO2 | transport and golgi organiz... | XR_001755161.1 | 35.4% | (many diffs) | |
| 54 | human | 128989 | TANGO2 | transport and golgi organiz... | XR_001755163.1 | 33.3% | (many diffs) | |
| 55 | human | 128989 | TANGO2 | transport and golgi organiz... | XR_001755164.1 | 26.2% | (many diffs) | |
| 56 | human | 128989 | TANGO2 | transport and golgi organiz... | NR_136211.1 | 23.3% | (many diffs) | |
| 57 | human | 128989 | TANGO2 | transport and golgi organiz... | NR_136212.1 | 20% | (many diffs) | |
| 58 | human | 128989 | TANGO2 | transport and golgi organiz... | NR_136206.1 | 18.1% | (many diffs) | |
| 59 | mouse | 27883 | Tango2 | transport and golgi organiz... | NM_138583.2 | 84.4% | 86.9% | (many diffs) |
| 60 | mouse | 27883 | Tango2 | transport and golgi organiz... | XM_006522227.2 | 84.4% | 86.9% | (many diffs) |
| 61 | mouse | 27883 | Tango2 | transport and golgi organiz... | XM_006522228.1 | 84.4% | 86.9% | (many diffs) |
| 62 | mouse | 27883 | Tango2 | transport and golgi organiz... | XM_011245929.1 | 84.4% | 86.9% | (many diffs) |
| 63 | mouse | 27883 | Tango2 | transport and golgi organiz... | XM_017317030.1 | 84.4% | 86.9% | (many diffs) |
| 64 | mouse | 27883 | Tango2 | transport and golgi organiz... | XM_017317031.1 | 84.4% | 86.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 894
- ORF length:
- 828
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CATCATCTTC TTTAAGTTTG ATCCTCGCCC TGTTTCCAAA AACGCGTACA 121 GGCTCATCTT GGCAGCCAAC AGGGATGAAT TCTACAGCCG ACCCTCCAAG TTAGCTGACT 181 TCTGGGGGAA CAACAACGAG ATCCTCAGTG GGCTGGACAT GGAGGAAGGC AAGGAAGGAG 241 GCACATGGCT GGGCATCAGC ACACGTGGCA AGCTGGCAGC ACTCACCAAC TACCTGCAGC 301 CGCAGCTGGA CTGGCAGGCC CGAGGGCGAG GTGAACTTGT CACCCACTTT CTGACCACTG 361 ACGTGGACAG CTTGTCCTAC CTGAAGAAGG TCTCTATGGA GGGCCATCTG TACAATGGCT 421 TCAACCTCAT AGCAGCCAAC CTGAGCACAG CAAAGGGAGA CGTCATTTGC TACTATGGGA 481 ACCGAGGGGA GCCTGATCCT ATCGTTTTGA CGCCAGGCAC CTACGGGCTG AGCAACGCGC 541 TGCTGGAGAC TCCCTGGAGG AAGCTGTGCT TTGGGAAGCA GCTCTTCCTG GAGGCTGTGG 601 AACGGAGCCA GGCGCTGCCC AAGGATGTGC TCATCGCCAG CCTCCTGGAT GTGCTCAACA 661 ATAAAGAGGC GCAGCTGCCA GACCCGGCCA TCGAGGACCA GGGTGGGGAG TACGTGCAGC 721 CCATGCTGAG CAAGTACGCG GCTGTGTGCG TGCGCTGCCC TGGCTACGGC ACCAGAACCA 781 ACACTATCAT CCTGGTAGAT GCGGACGGCC ACGTGACCTT CACTGAGCGT AGCATGATGG 841 ACAAGGACCT CTCCCACTGG GAGACCAGAA CCTATGAGTT CACACTGCAG AGCTACCCAA 901 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac