Construct: ORF ccsbBroad304_15990

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006620.1_s304c1, BRDN0000398772
Derived from:
ccsbBroadEn_15990
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACBD4 (79777)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15990
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79777 ACBD4 acyl-CoA binding domain con... NM_001135705.3 100% 100%
2 human 79777 ACBD4 acyl-CoA binding domain con... NM_024722.4 100% 100%
3 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025091.1 100% 100%
4 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025092.2 100% 100%
5 human 79777 ACBD4 acyl-CoA binding domain con... XM_006722085.2 99.6% 99.6% 573_575delGCA
6 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025090.1 97.7% 97.7% 573_593del
7 human 79777 ACBD4 acyl-CoA binding domain con... NM_001135706.3 89.4% 55.7% 500_537del;954_1023del
8 human 79777 ACBD4 acyl-CoA binding domain con... NM_001321352.2 89.4% 55.7% 500_537del;954_1023del
9 human 79777 ACBD4 acyl-CoA binding domain con... NM_001321353.2 89.4% 55.7% 500_537del;954_1023del
10 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025088.1 89.4% 55.7% 500_537del;954_1023del
11 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025087.1 89.1% 55.7% 500_537del;611_613delGCA;957_1026del
12 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025084.1 87.6% 56.9% 500_537del;611_631del;975_1044del
13 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025085.1 87.6% 56.9% 500_537del;611_631del;975_1044del
14 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025086.1 87.6% 56.9% 500_537del;611_631del;975_1044del
15 human 79777 ACBD4 acyl-CoA binding domain con... NM_001135707.3 87.1% 65.2% (many diffs)
16 human 79777 ACBD4 acyl-CoA binding domain con... XM_024450949.1 86.9% 80.4% (many diffs)
17 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025089.2 86.6% 80.1% (many diffs)
18 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025094.1 84.9% 55.1% (many diffs)
19 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025093.1 82.8% 56.7% (many diffs)
20 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025099.1 81.8% 67.7% 647_648ins140;776_807del
21 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025097.1 81.3% 72.4% 500_537del;685_686ins140
22 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025098.1 81.3% 72.4% 500_537del;685_686ins140
23 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025096.1 80% 66.3% 573_593del;668_669ins140;797_828del
24 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025095.1 79.5% 71.3% 500_537del;611_631del;706_707ins140
25 human 79777 ACBD4 acyl-CoA binding domain con... XM_011525259.2 73.7% 53.1% (many diffs)
26 human 79777 ACBD4 acyl-CoA binding domain con... XM_011525261.2 72.5% 71.8% (many diffs)
27 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025100.1 72.1% 54.3% (many diffs)
28 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025101.2 70.9% 70.2% (many diffs)
29 human 79777 ACBD4 acyl-CoA binding domain con... XM_024450950.1 60.4% 32.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
981
ORF length:
915
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg caccgagaaa gaaagcccag agcccgactg ccagaaacag ttccaggctg
121cagtgagcgt catccagaac ctgcccaaga acggttctta ccgcccctcc tatgaagaga
181tgctgcgatt ctacagttac tacaagcagg ccaccatggg gccctgcctg gtcccccggc
241ccgggttctg ggaccccatt ggacgatata agtgggacgc ctggaacagt ctgggcaaga
301tgagcaggga ggaggccatg tctgcctaca tcactgaaat gaaactggtg gcacagaagg
361tgatcgacac agtgcccctg ggtgaggtgg cagaggacat gtttggttac ttcgagcccc
421tgtaccaggt gatccctgac atgccgaggc ccccagagac cttcctgaga agggtcacag
481gttggaaaga gcaggttgtg aatggagatg ttggggctgt ttcagagcct ccctgcctcc
541ccaaggaacc ggcaccccca agcccagagt cccattcacc cagggacctg gactccgagg
601ttttctgtga ttccctggag cagctggagc ctgagctggt ttggacagag cagcgggcag
661catctggagg aaagcgtgat cccaggaaca gccccgtgcc ccccacaaag aaagaggggt
721tgcggggcag cccgccgggg ccccaggagt tggacgtgtg gctgctgggg acagttcgag
781cactacagga gagcatgcag gaggtgcagg cgagggtgca gagcctggag agcatgcccc
841ggccccctga gcagaggccg cagcccaggc ccagtgctcg gccatggccc cttgggctcc
901cggggcccgc gctgctcttc ttcctcctgt ggcccttcgt cgtccagtgg ctcttccgaa
961tgtttcggac ccaaaagagg tnnccaactt tcttgtacaa agtggttggt aagcctatcc
1021ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1081ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)