Construct: ORF ccsbBroadEn_15990

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006620.1_s300c1, BRDN0000385022
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACBD4 (79777)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79777 ACBD4 acyl-CoA binding domain con... NM_001135705.3 100% 100%
2 human 79777 ACBD4 acyl-CoA binding domain con... NM_024722.4 100% 100%
3 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025091.1 100% 100%
4 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025092.2 100% 100%
5 human 79777 ACBD4 acyl-CoA binding domain con... XM_006722085.2 99.6% 99.6% 573_575delGCA
6 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025090.1 97.7% 97.7% 573_593del
7 human 79777 ACBD4 acyl-CoA binding domain con... NM_001135706.3 89.4% 55.7% 500_537del;954_1023del
8 human 79777 ACBD4 acyl-CoA binding domain con... NM_001321352.2 89.4% 55.7% 500_537del;954_1023del
9 human 79777 ACBD4 acyl-CoA binding domain con... NM_001321353.2 89.4% 55.7% 500_537del;954_1023del
10 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025088.1 89.4% 55.7% 500_537del;954_1023del
11 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025087.1 89.1% 55.7% 500_537del;611_613delGCA;957_1026del
12 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025084.1 87.6% 56.9% 500_537del;611_631del;975_1044del
13 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025085.1 87.6% 56.9% 500_537del;611_631del;975_1044del
14 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025086.1 87.6% 56.9% 500_537del;611_631del;975_1044del
15 human 79777 ACBD4 acyl-CoA binding domain con... NM_001135707.3 87.1% 65.2% (many diffs)
16 human 79777 ACBD4 acyl-CoA binding domain con... XM_024450949.1 86.9% 80.4% (many diffs)
17 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025089.2 86.6% 80.1% (many diffs)
18 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025094.1 84.9% 55.1% (many diffs)
19 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025093.1 82.8% 56.7% (many diffs)
20 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025099.1 81.8% 67.7% 647_648ins140;776_807del
21 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025097.1 81.3% 72.4% 500_537del;685_686ins140
22 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025098.1 81.3% 72.4% 500_537del;685_686ins140
23 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025096.1 80% 66.3% 573_593del;668_669ins140;797_828del
24 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025095.1 79.5% 71.3% 500_537del;611_631del;706_707ins140
25 human 79777 ACBD4 acyl-CoA binding domain con... XM_011525259.2 73.7% 53.1% (many diffs)
26 human 79777 ACBD4 acyl-CoA binding domain con... XM_011525261.2 72.5% 71.8% (many diffs)
27 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025100.1 72.1% 54.3% (many diffs)
28 human 79777 ACBD4 acyl-CoA binding domain con... XM_017025101.2 70.9% 70.2% (many diffs)
29 human 79777 ACBD4 acyl-CoA binding domain con... XM_024450950.1 60.4% 32.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
981
ORF length:
915
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatggg caccgagaaa gaaagcccag agcccgactg ccagaaacag ttccaggctg
121cagtgagcgt catccagaac ctgcccaaga acggttctta ccgcccctcc tatgaagaga
181tgctgcgatt ctacagttac tacaagcagg ccaccatggg gccctgcctg gtcccccggc
241ccgggttctg ggaccccatt ggacgatata agtgggacgc ctggaacagt ctgggcaaga
301tgagcaggga ggaggccatg tctgcctaca tcactgaaat gaaactggtg gcacagaagg
361tgatcgacac agtgcccctg ggtgaggtgg cagaggacat gtttggttac ttcgagcccc
421tgtaccaggt gatccctgac atgccgaggc ccccagagac cttcctgaga agggtcacag
481gttggaaaga gcaggttgtg aatggagatg ttggggctgt ttcagagcct ccctgcctcc
541ccaaggaacc ggcaccccca agcccagagt cccattcacc cagggacctg gactccgagg
601ttttctgtga ttccctggag cagctggagc ctgagctggt ttggacagag cagcgggcag
661catctggagg aaagcgtgat cccaggaaca gccccgtgcc ccccacaaag aaagaggggt
721tgcggggcag cccgccgggg ccccaggagt tggacgtgtg gctgctgggg acagttcgag
781cactacagga gagcatgcag gaggtgcagg cgagggtgca gagcctggag agcatgcccc
841ggccccctga gcagaggccg cagcccaggc ccagtgctcg gccatggccc cttgggctcc
901cggggcccgc gctgctcttc ttcctcctgt ggcccttcgt cgtccagtgg ctcttccgaa
961tgtttcggac ccaaaagagg tnnccaactt tcttgtacaa agttggcatt ataagaaagc
1021attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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